start setting up ci to run Snakemake

legend-exp · Feb 7, 2025 · c51e7bb · c51e7bb
1 parent 5f3a6b7
commit c51e7bb
Showing 1 changed file with 41 additions and 3 deletions.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -1,4 +1,4 @@
-name: lgdo
+name: legend-dataflow
 
 on:
   workflow_dispatch:
@@ -16,8 +16,8 @@ env:
   FORCE_COLOR: 3
 
 jobs:
-  build-and-test:
-    name: Test lgdo with Python
+  unit-tests:
+    name: Run legend-dataflow unit tests
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
@@ -39,6 +39,44 @@ jobs:
         run: |
           python -m pytest
 
+  run-dataflow:
+    if: github.event.pull_request.head.repo.fork == false
+    name: Run the Snakemake workflow
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: ["3.11", "3.12"]
+        os: [ubuntu-latest, macos-13]
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Set LEGEND_METADATA variable
+        run: |
+          echo "LEGEND_METADATA=$GITHUB_WORKSPACE/inputs" >> $GITHUB_ENV
+      - name: Clone legend-metadata
+        uses: actions/checkout@v4
+        with:
+          repository: legend-exp/legend-metadata
+          fetch-depth: 0
+          submodules: recursive
+          token: ${{ secrets.CLONE_LEGEND_METADATA }}
+          path: ${{ env.LEGEND_METADATA }}
+
+      - name: Get dependencies and install legend-dataflow
+        run: |
+          python -m pip install --upgrade uv
+          python -m uv pip install --upgrade .[runprod]
+
+      - name: Set the PRODENV variable
+        run: |
+          echo "PRODENV=$(realpath $GITHUB_WORKSPACE/..)" >> $GITHUB_ENV
+
   test-coverage:
     name: Calculate and upload test coverage
     runs-on: ubuntu-latest