CI improvements

[gipert]

No description provided.

[codecov]

Codecov Report

Attention: Patch coverage is 30.00000% with 7 lines in your changes missing coverage. Please review.

Project coverage is 43.63%. Comparing base (9d7303a) to head (8961beb).
Report is 28 commits behind head on main.

Files with missing lines	Patch %	Lines
workflow/src/legenddataflow/execenv.py	16.66%	5 Missing ⚠️
workflow/src/legenddataflow/utils.py	50.00%	2 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #100      +/-   ##
==========================================
- Coverage   43.66%   43.63%   -0.03%     
==========================================
  Files          17       17              
  Lines        1152     1155       +3     
==========================================
+ Hits          503      504       +1     
- Misses        649      651       +2     

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[gipert]

@ggmarshall can you spot the problem? If you fix it then it's good to merge. Unfortunately --touch does not touch non-existing files -> that's something we can easily add to the plugin.

But is touching output files smart? Do we code in the Snakefiles that needs to interact with non-dummy outputs?

[gipert]

I have to implement something to make the test output more readable...

[gipert]

@ggmarshall what about now?

[ggmarshall]

this is tougher to fix as those aren't stored on git, I want to remove them soon

[gipert]

let's just touch them?

[ggmarshall]

Sure let’s do that for the moment

[ggmarshall]

I want to remove them eventually though

[gipert]

I'm gonna merge this since tests pass, we can find a way to speed up the thing with a future PR