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@leiferlab

Leifer Lab @ Princeton University

Probing the neural dynamics of C. elegans during behavior.

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  1. savitzkygolay savitzkygolay Public

    Savitzky-Golay filters

    Python 16 7

  2. NeRVEclustering NeRVEclustering Public

    Code accompanying Nguyen JP, Linder AN, Plummer GS, Shaevitz JW, Leifer AM (2017) Automatically tracking neurons in a moving and deforming brain. PLoS Comput Biol 13(5): e1005517.

    MATLAB 8 4

  3. mindcontrol mindcontrol Public

    Forked from samuellab/mindcontrol

    Closed-loop computer vision software to track and deliver patterned illumination to freely moving C. elegans as part of the CoLBeRT instrument.

    C++ 6 1

  4. worm-functional-connectivity worm-functional-connectivity Public

    Python 4 7

  5. pumpprobe pumpprobe Public

    Signal propagation atlas libraries, Randi et al. 2022

    Python 4 2

  6. liu-temporal-processing liu-temporal-processing Public

    Source code associated with Liu et al "Temporal processing and context dependency in C. elegans response to mechanosensation"

    MATLAB 3 3

Repositories

Showing 10 of 31 repositories
  • leiferlab.princeton.edu Public

    Lab homepage

    leiferlab/leiferlab.princeton.edu’s past year of commit activity
    HTML 1 1 0 1 Updated Dec 23, 2024
  • leiferlab/kumar-molecular-mechanism’s past year of commit activity
    LabVIEW 0 GPL-3.0 0 0 0 Updated Aug 9, 2024
  • wormdatamodel Public

    Data model for whole brain recordings

    leiferlab/wormdatamodel’s past year of commit activity
    Python 2 GPL-3.0 4 0 1 Updated May 13, 2024
  • HighMagNeuron Public

    Xinwei's pipeline for high mag neuron segmentation

    leiferlab/HighMagNeuron’s past year of commit activity
    Python 0 0 2 0 Updated Apr 23, 2024
  • leiferlab/CenterlineTracking’s past year of commit activity
    MATLAB 2 2 0 0 Updated Apr 18, 2024
  • spontdyn Public

    Data analysis for Gauthey et al. 2024.

    leiferlab/spontdyn’s past year of commit activity
    Python 0 0 0 0 Updated Jan 10, 2024
  • pumpprobe Public

    Signal propagation atlas libraries, Randi et al. 2022

    leiferlab/pumpprobe’s past year of commit activity
    Python 4 GPL-3.0 2 1 0 Updated Sep 20, 2023
  • wormbrain Public

    Handling of small brains

    leiferlab/wormbrain’s past year of commit activity
    Python 2 GPL-3.0 2 0 0 Updated Aug 16, 2023
  • pump-probe-acquisition Public

    Francesco's LabView code for pump-probe experiments. www.github.com/leiferlab/pump-probe-acquisition#francescos-labview-code README at the bottom of the long list of files, which are actually well organized in the LabView project pump-probe.lvproj

    leiferlab/pump-probe-acquisition’s past year of commit activity
    LabVIEW 2 1 0 0 Updated Aug 14, 2023
  • wormneuronsegmentation-c Public

    Optimized code for neuron finding and pseudo-segmentation

    leiferlab/wormneuronsegmentation-c’s past year of commit activity
    C++ 0 GPL-3.0 0 0 0 Updated Aug 14, 2023

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