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Version 1.1.0
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@henav henav released this 09 May 10:07
· 88 commits to master since this release
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3e752b6

Changes to simplify and solve file naming procedure, and solve BLAST error resulting from too long fasta headers.

Specific changes:
a. Added script "old_to_new_names.py": changes the file names in the target folder to "Sample.xxx", fasta headers to "contig.yyy", writes the changes to a table, and assigns all sequences to a single file. It is called from find_overlapping_regions.sh.
b. Modified "find_overlapping_regions.sh", to use "old_to_new_names.py" instead of sed command in step 1.
c. Modified "SynTracker.R" to read the table generated by "old_to_new_names.py" and change temporarily assigned sample names back to the original sample names (i.e., file names).
d. Changed "SynTracker_functions.R" to handle the new naming format.

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