LncPipe_v0.2.5

• Add ncRNA name map output
• Fix typos

LncPipe_v0.2.4

• Fix typos
• Add tolerance to null design file
• Fix hisat2 alignment parameters
• Add singularity support

LncPipe_v0.2.3

• fix some known bugs for generate input of lncPipeReporter
• fix docker image supporting bugs

LncPipe v0.2.1 stable version

• Remove the functions that can automaticaly build index for alignment.
• fix '-resume' not working for alignment step.
• Add support for skipping qc analysis steps

LncPipe_v0.2.0-stable version

#Major improvement

• support for extra non-human species
• add fastp support
• add HTseq quantification support
• add DESeq2 and NOIseq DEanalysis surport
• fix a big bug that filtered a lot of known lncRNAs !
• change the quantification from transcripts level to gene level !
• fix exon miscounting induced by differ output of stringtie and cufflinks
• fix several spelling errors in readme and code file

LncPipe_v0.1.1

v0.1.1
fix issues caused by configuration in multiple operation system and environment

First stable release

v0.1.0

version 0.1.0 release