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Convert PS-OCT MAT files to OME-Zarr #40

Convert PS-OCT MAT files to OME-Zarr

Convert PS-OCT MAT files to OME-Zarr #40

Workflow file for this run

name: CI
on: pull_request
jobs:
ci:
strategy:
fail-fast: false
matrix:
python-version: ["3.10", "3.11", "3.12", "3.13"]
poetry-version: ["latest", "1.8.4"]
# glymur needs dynamic library on macos and windows, and causing error
# os: [ubuntu-22.04, macos-latest, windows-latest]
os: [ubuntu-22.04]
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Run image
uses: abatilo/actions-poetry@v2
with:
poetry-version: ${{ matrix.poetry-version }}
- name: View poetry --help
run: poetry --help
- name: Setup a local virtual environment (if no poetry.toml file)
run: |
poetry config virtualenvs.create true --local
poetry config virtualenvs.in-project true --local
- uses: actions/cache@v3
name: Define a cache for the virtual environment based on the dependencies lock file
with:
path: ./.venv
key: venv-${{ hashFiles('poetry.lock') }}
- name: Install the project dependencies
run: poetry install --with dev,lsm,df
- name: Run the automated tests
run: poetry run pytest -v
working-directory: ./tests