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kabilar committed Dec 30, 2024

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dandi download --preserve-tree dandi://linc/101010@draft/dataset_description.json
```

The above example will create a directory called `/path/to/my/staging/area/101010`. Any data files that you want to upload to your new lincbrain.org dataset have to first be saved here, and organized according to the [Brain Imaging Data Structure (BIDS)](https://bids-specification.readthedocs.io/).
The above example will create a directory called `/path/to/my/staging/area/101010`. Any data files that you want to upload to the lincbrain.org dataset have to first be saved here, and organized according to the [Brain Imaging Data Structure (BIDS)](https://bids-specification.readthedocs.io/).

For more information, on the `--preserve-tree` option please see the [DANDI Handbook](https://www.dandiarchive.org/handbook/12_download/#download-the-dandisetyaml-file-and-a-specific-file-within-the-directory-tree-of-the-dandiset).
For more information on the `--preserve-tree` option please see the [DANDI Handbook](https://www.dandiarchive.org/handbook/12_download/#download-the-dandisetyaml-file-and-a-specific-file-within-the-directory-tree-of-the-dandiset).

## Organize your data
An example from a (fictional) dataset that includes dMRI and histology data from two brains is shown below. This can be used as a guide for organizing your own dataset. A few things to watch out for:
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```

## Upload your data
If you are uploading to a new or existing dataset on lincbrain.org, please ensure that you have the `dandiset.yaml` and `dataset_description.json` files in your local directory (i.e. the `/path/to/my/staging/area/101010` in the example above).
If you are uploading to a new or existing dataset on lincbrain.org, please ensure that you have the `dandiset.yaml` and `dataset_description.json` files in your local directory (i.e. the `/path/to/my/staging/area/101010` directory in the example above).

Upload the data from your local machine to lincbrain.org:

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