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Add Linked Open Vocabularies recommended ontology metadata #210

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Add Linked Open Vocabularies recommended ontology metadata #210

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2 changes: 2 additions & 0 deletions .gitignore
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Expand Up @@ -158,3 +158,5 @@ cython_debug/

# Apple stuff
.DS_Store

tmp/
2 changes: 1 addition & 1 deletion linkml_model/annotations.py
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@@ -1,5 +1,5 @@
# Auto generated from annotations.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-02-07T17:29:22
# Generation date: 2024-12-24T10:53:56
# Schema: annotations
#
# id: https://w3id.org/linkml/annotations
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2 changes: 1 addition & 1 deletion linkml_model/datasets.py
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@@ -1,5 +1,5 @@
# Auto generated from datasets.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-02-07T17:29:27
# Generation date: 2024-12-24T10:53:59
# Schema: datasets
#
# id: https://w3id.org/linkml/datasets
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Binary file modified linkml_model/excel/meta.xlsx
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2 changes: 1 addition & 1 deletion linkml_model/extensions.py
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@@ -1,5 +1,5 @@
# Auto generated from extensions.yaml by pythongen.py version: 0.0.1
# Generation date: 2024-02-07T17:29:29
# Generation date: 2024-12-24T10:54:02
# Schema: extensions
#
# id: https://w3id.org/linkml/extensions
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109 changes: 106 additions & 3 deletions linkml_model/graphql/meta.graphql
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Expand Up @@ -156,8 +156,10 @@ type AnonymousSlotExpression implements SlotExpression
range: Element
rangeExpression: AnonymousClassExpression
enumRange: EnumExpression
bindings: [EnumBinding]
required: Boolean
recommended: Boolean
multivalued: Boolean
inlined: Boolean
inlinedAsList: Boolean
minimumValue: Anything
Expand All @@ -180,6 +182,7 @@ type AnonymousSlotExpression implements SlotExpression
exactlyOneOf: [AnonymousSlotExpression]
anyOf: [AnonymousSlotExpression]
allOf: [AnonymousSlotExpression]
array: ArrayExpression
}

type AnonymousTypeExpression implements TypeExpression
Expand Down Expand Up @@ -212,7 +215,6 @@ type ArrayExpression implements Extensible, Annotatable, CommonMetadata
exactNumberDimensions: Integer
minimumNumberDimensions: Integer
maximumNumberDimensions: Anything
hasExtraDimensions: Boolean
dimensions: [DimensionExpression]
extensions: [Extension]
annotations: [Annotation]
Expand Down Expand Up @@ -315,6 +317,7 @@ type ClassDefinition implements ClassExpression
representsRelationship: Boolean
disjointWith: [ClassDefinition]
childrenAreMutuallyDisjoint: Boolean
extraSlots: ExtraSlotsExpression
isA: ClassDefinition
mixins: [ClassDefinition]
applyTo: [ClassDefinition]
Expand Down Expand Up @@ -564,6 +567,49 @@ type Element implements Extensible, Annotatable, CommonMetadata
keywords: [String]
}

type EnumBinding implements Extensible, Annotatable, CommonMetadata
{
range: EnumDefinition
obligationLevel: ObligationLevelEnum
bindsValueOf: String
pvFormula: PvFormulaOptions
extensions: [Extension]
annotations: [Annotation]
description: String
altDescriptions: [AltDescription]
title: String
deprecated: String
todos: [String]
notes: [String]
comments: [String]
examples: [Example]
inSubset: [SubsetDefinition]
fromSchema: Uri
importedFrom: String
source: Uriorcurie
inLanguage: String
seeAlso: [Uriorcurie]
deprecatedElementHasExactReplacement: Uriorcurie
deprecatedElementHasPossibleReplacement: Uriorcurie
aliases: [String]
structuredAliases: [StructuredAlias]
mappings: [Uriorcurie]
exactMappings: [Uriorcurie]
closeMappings: [Uriorcurie]
relatedMappings: [Uriorcurie]
narrowMappings: [Uriorcurie]
broadMappings: [Uriorcurie]
createdBy: Uriorcurie
contributors: [Uriorcurie]
createdOn: Datetime
lastUpdatedOn: Datetime
modifiedBy: Uriorcurie
status: Uriorcurie
rank: Integer
categories: [Uriorcurie]
keywords: [String]
}

type EnumDefinition implements EnumExpression
{
name: String!
Expand Down Expand Up @@ -668,6 +714,12 @@ type Extension
extensions: [Extension]
}

type ExtraSlotsExpression implements Expression
{
allowed: Boolean
rangeExpression: AnonymousClassExpression
}

type ImportExpression implements Extensible, Annotatable, CommonMetadata
{
importFrom: Uriorcurie!
Expand Down Expand Up @@ -817,6 +869,8 @@ type PermissibleValue implements Extensible, Annotatable, CommonMetadata
description: String
meaning: Uriorcurie
unit: UnitOfMeasure
instantiates: [Uriorcurie]
implements: [Uriorcurie]
isA: PermissibleValue
mixins: [PermissibleValue]
extensions: [Extension]
Expand Down Expand Up @@ -936,6 +990,7 @@ type SchemaDefinition
generationDate: Datetime
slotNamesUnique: Boolean
settings: [Setting]
bindings: [EnumBinding]
name: Ncname!
}

Expand Down Expand Up @@ -997,8 +1052,6 @@ type SlotDefinition implements SlotExpression
singularName: String
domain: ClassDefinition
slotUri: Uriorcurie
multivalued: Boolean
array: ArrayExpression
inherited: Boolean
readonly: String
ifabsent: String
Expand Down Expand Up @@ -1032,14 +1085,17 @@ type SlotDefinition implements SlotExpression
disjointWith: [SlotDefinition]
childrenAreMutuallyDisjoint: Boolean
unionOf: [SlotDefinition]
typeMappings: [TypeMapping]
isA: SlotDefinition
mixins: [SlotDefinition]
applyTo: [SlotDefinition]
range: Element
rangeExpression: AnonymousClassExpression
enumRange: EnumExpression
bindings: [EnumBinding]
required: Boolean
recommended: Boolean
multivalued: Boolean
inlined: Boolean
inlinedAsList: Boolean
minimumValue: Anything
Expand All @@ -1062,15 +1118,18 @@ type SlotDefinition implements SlotExpression
exactlyOneOf: [AnonymousSlotExpression]
anyOf: [AnonymousSlotExpression]
allOf: [AnonymousSlotExpression]
array: ArrayExpression
}

interface SlotExpression
{
range: Element
rangeExpression: AnonymousClassExpression
enumRange: EnumExpression
bindings: [EnumBinding]
required: Boolean
recommended: Boolean
multivalued: Boolean
inlined: Boolean
inlinedAsList: Boolean
minimumValue: Anything
Expand All @@ -1093,13 +1152,15 @@ interface SlotExpression
exactlyOneOf: [AnonymousSlotExpression]
anyOf: [AnonymousSlotExpression]
allOf: [AnonymousSlotExpression]
array: ArrayExpression
}

type StructuredAlias implements Expression, Extensible, Annotatable, CommonMetadata
{
literalForm: String!
predicate: AliasPredicateEnum
categories: [Uriorcurie]
contexts: [Uri]
extensions: [Extension]
annotations: [Annotation]
description: String
Expand Down Expand Up @@ -1265,6 +1326,48 @@ interface TypeExpression
allOf: [AnonymousTypeExpression]
}

type TypeMapping implements Extensible, Annotatable, CommonMetadata
{
framework: String!
type: TypeDefinition
stringSerialization: String
extensions: [Extension]
annotations: [Annotation]
description: String
altDescriptions: [AltDescription]
title: String
deprecated: String
todos: [String]
notes: [String]
comments: [String]
examples: [Example]
inSubset: [SubsetDefinition]
fromSchema: Uri
importedFrom: String
source: Uriorcurie
inLanguage: String
seeAlso: [Uriorcurie]
deprecatedElementHasExactReplacement: Uriorcurie
deprecatedElementHasPossibleReplacement: Uriorcurie
aliases: [String]
structuredAliases: [StructuredAlias]
mappings: [Uriorcurie]
exactMappings: [Uriorcurie]
closeMappings: [Uriorcurie]
relatedMappings: [Uriorcurie]
narrowMappings: [Uriorcurie]
broadMappings: [Uriorcurie]
createdBy: Uriorcurie
contributors: [Uriorcurie]
createdOn: Datetime
lastUpdatedOn: Datetime
modifiedBy: Uriorcurie
status: Uriorcurie
rank: Integer
categories: [Uriorcurie]
keywords: [String]
}

type UniqueKey implements Extensible, Annotatable, CommonMetadata
{
uniqueKeyName: String!
Expand Down
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