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Merge pull request UofT-DSI#97 from HongleiXie/main
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updates for cohort 4
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@danielrazavi
danielrazavi authored Sep 24, 2024
2 parents 6c15c09 + c2cff92 commit 359a290
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Showing 8 changed files with 799 additions and 674 deletions.
114 changes: 57 additions & 57 deletions 01_materials/notebooks/Classification-1.ipynb
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},
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},
{
"cell_type": "code",
"execution_count": 24,
"execution_count": 2,
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{
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" <th>concavity_mean</th>\n",
" <th>concave points_mean</th>\n",
" <th>...</th>\n",
" <th>radius_worst</th>\n",
" <th>texture_worst</th>\n",
" <th>perimeter_worst</th>\n",
" <th>area_worst</th>\n",
Expand All @@ -77,7 +78,6 @@
" <th>concave points_worst</th>\n",
" <th>symmetry_worst</th>\n",
" <th>fractal_dimension_worst</th>\n",
" <th>Unnamed: 32</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
Expand All @@ -94,6 +94,7 @@
" <td>0.30010</td>\n",
" <td>0.14710</td>\n",
" <td>...</td>\n",
" <td>25.380</td>\n",
" <td>17.33</td>\n",
" <td>184.60</td>\n",
" <td>2019.0</td>\n",
Expand All @@ -103,7 +104,6 @@
" <td>0.2654</td>\n",
" <td>0.4601</td>\n",
" <td>0.11890</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
Expand All @@ -118,6 +118,7 @@
" <td>0.08690</td>\n",
" <td>0.07017</td>\n",
" <td>...</td>\n",
" <td>24.990</td>\n",
" <td>23.41</td>\n",
" <td>158.80</td>\n",
" <td>1956.0</td>\n",
Expand All @@ -127,7 +128,6 @@
" <td>0.1860</td>\n",
" <td>0.2750</td>\n",
" <td>0.08902</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
Expand All @@ -142,6 +142,7 @@
" <td>0.19740</td>\n",
" <td>0.12790</td>\n",
" <td>...</td>\n",
" <td>23.570</td>\n",
" <td>25.53</td>\n",
" <td>152.50</td>\n",
" <td>1709.0</td>\n",
Expand All @@ -151,7 +152,6 @@
" <td>0.2430</td>\n",
" <td>0.3613</td>\n",
" <td>0.08758</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
Expand All @@ -166,6 +166,7 @@
" <td>0.24140</td>\n",
" <td>0.10520</td>\n",
" <td>...</td>\n",
" <td>14.910</td>\n",
" <td>26.50</td>\n",
" <td>98.87</td>\n",
" <td>567.7</td>\n",
Expand All @@ -175,7 +176,6 @@
" <td>0.2575</td>\n",
" <td>0.6638</td>\n",
" <td>0.17300</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
Expand All @@ -190,6 +190,7 @@
" <td>0.19800</td>\n",
" <td>0.10430</td>\n",
" <td>...</td>\n",
" <td>22.540</td>\n",
" <td>16.67</td>\n",
" <td>152.20</td>\n",
" <td>1575.0</td>\n",
Expand All @@ -199,7 +200,6 @@
" <td>0.1625</td>\n",
" <td>0.2364</td>\n",
" <td>0.07678</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>...</th>\n",
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" <td>0.24390</td>\n",
" <td>0.13890</td>\n",
" <td>...</td>\n",
" <td>25.450</td>\n",
" <td>26.40</td>\n",
" <td>166.10</td>\n",
" <td>2027.0</td>\n",
Expand All @@ -247,7 +248,6 @@
" <td>0.2216</td>\n",
" <td>0.2060</td>\n",
" <td>0.07115</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>565</th>\n",
Expand All @@ -262,6 +262,7 @@
" <td>0.14400</td>\n",
" <td>0.09791</td>\n",
" <td>...</td>\n",
" <td>23.690</td>\n",
" <td>38.25</td>\n",
" <td>155.00</td>\n",
" <td>1731.0</td>\n",
Expand All @@ -271,7 +272,6 @@
" <td>0.1628</td>\n",
" <td>0.2572</td>\n",
" <td>0.06637</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>566</th>\n",
Expand All @@ -286,6 +286,7 @@
" <td>0.09251</td>\n",
" <td>0.05302</td>\n",
" <td>...</td>\n",
" <td>18.980</td>\n",
" <td>34.12</td>\n",
" <td>126.70</td>\n",
" <td>1124.0</td>\n",
Expand All @@ -295,7 +296,6 @@
" <td>0.1418</td>\n",
" <td>0.2218</td>\n",
" <td>0.07820</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>567</th>\n",
Expand All @@ -310,6 +310,7 @@
" <td>0.35140</td>\n",
" <td>0.15200</td>\n",
" <td>...</td>\n",
" <td>25.740</td>\n",
" <td>39.42</td>\n",
" <td>184.60</td>\n",
" <td>1821.0</td>\n",
Expand All @@ -319,7 +320,6 @@
" <td>0.2650</td>\n",
" <td>0.4087</td>\n",
" <td>0.12400</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" <tr>\n",
" <th>568</th>\n",
Expand All @@ -334,6 +334,7 @@
" <td>0.00000</td>\n",
" <td>0.00000</td>\n",
" <td>...</td>\n",
" <td>9.456</td>\n",
" <td>30.37</td>\n",
" <td>59.16</td>\n",
" <td>268.6</td>\n",
Expand All @@ -343,11 +344,10 @@
" <td>0.0000</td>\n",
" <td>0.2871</td>\n",
" <td>0.07039</td>\n",
" <td>NaN</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>569 rows × 33 columns</p>\n",
"<p>569 rows × 32 columns</p>\n",
"</div>"
],
"text/plain": [
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"567 0.11780 0.27700 0.35140 0.15200 \n",
"568 0.05263 0.04362 0.00000 0.00000 \n",
"\n",
" ... texture_worst perimeter_worst area_worst smoothness_worst \\\n",
"0 ... 17.33 184.60 2019.0 0.16220 \n",
"1 ... 23.41 158.80 1956.0 0.12380 \n",
"2 ... 25.53 152.50 1709.0 0.14440 \n",
"3 ... 26.50 98.87 567.7 0.20980 \n",
"4 ... 16.67 152.20 1575.0 0.13740 \n",
".. ... ... ... ... ... \n",
"564 ... 26.40 166.10 2027.0 0.14100 \n",
"565 ... 38.25 155.00 1731.0 0.11660 \n",
"566 ... 34.12 126.70 1124.0 0.11390 \n",
"567 ... 39.42 184.60 1821.0 0.16500 \n",
"568 ... 30.37 59.16 268.6 0.08996 \n",
"\n",
" compactness_worst concavity_worst concave points_worst symmetry_worst \\\n",
"0 0.66560 0.7119 0.2654 0.4601 \n",
"1 0.18660 0.2416 0.1860 0.2750 \n",
"2 0.42450 0.4504 0.2430 0.3613 \n",
"3 0.86630 0.6869 0.2575 0.6638 \n",
"4 0.20500 0.4000 0.1625 0.2364 \n",
".. ... ... ... ... \n",
"564 0.21130 0.4107 0.2216 0.2060 \n",
"565 0.19220 0.3215 0.1628 0.2572 \n",
"566 0.30940 0.3403 0.1418 0.2218 \n",
"567 0.86810 0.9387 0.2650 0.4087 \n",
"568 0.06444 0.0000 0.0000 0.2871 \n",
"\n",
" fractal_dimension_worst Unnamed: 32 \n",
"0 0.11890 NaN \n",
"1 0.08902 NaN \n",
"2 0.08758 NaN \n",
"3 0.17300 NaN \n",
"4 0.07678 NaN \n",
".. ... ... \n",
"564 0.07115 NaN \n",
"565 0.06637 NaN \n",
"566 0.07820 NaN \n",
"567 0.12400 NaN \n",
"568 0.07039 NaN \n",
"\n",
"[569 rows x 33 columns]"
" ... radius_worst texture_worst perimeter_worst area_worst \\\n",
"0 ... 25.380 17.33 184.60 2019.0 \n",
"1 ... 24.990 23.41 158.80 1956.0 \n",
"2 ... 23.570 25.53 152.50 1709.0 \n",
"3 ... 14.910 26.50 98.87 567.7 \n",
"4 ... 22.540 16.67 152.20 1575.0 \n",
".. ... ... ... ... ... \n",
"564 ... 25.450 26.40 166.10 2027.0 \n",
"565 ... 23.690 38.25 155.00 1731.0 \n",
"566 ... 18.980 34.12 126.70 1124.0 \n",
"567 ... 25.740 39.42 184.60 1821.0 \n",
"568 ... 9.456 30.37 59.16 268.6 \n",
"\n",
" smoothness_worst compactness_worst concavity_worst \\\n",
"0 0.16220 0.66560 0.7119 \n",
"1 0.12380 0.18660 0.2416 \n",
"2 0.14440 0.42450 0.4504 \n",
"3 0.20980 0.86630 0.6869 \n",
"4 0.13740 0.20500 0.4000 \n",
".. ... ... ... \n",
"564 0.14100 0.21130 0.4107 \n",
"565 0.11660 0.19220 0.3215 \n",
"566 0.11390 0.30940 0.3403 \n",
"567 0.16500 0.86810 0.9387 \n",
"568 0.08996 0.06444 0.0000 \n",
"\n",
" concave points_worst symmetry_worst fractal_dimension_worst \n",
"0 0.2654 0.4601 0.11890 \n",
"1 0.1860 0.2750 0.08902 \n",
"2 0.2430 0.3613 0.08758 \n",
"3 0.2575 0.6638 0.17300 \n",
"4 0.1625 0.2364 0.07678 \n",
".. ... ... ... \n",
"564 0.2216 0.2060 0.07115 \n",
"565 0.1628 0.2572 0.06637 \n",
"566 0.1418 0.2218 0.07820 \n",
"567 0.2650 0.4087 0.12400 \n",
"568 0.0000 0.2871 0.07039 \n",
"\n",
"[569 rows x 32 columns]"
]
},
"execution_count": 24,
"execution_count": 2,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"cancer = pd.read_csv('wdbc.csv')\n",
"cancer = pd.read_csv('dataset/wdbc.csv')\n",
"cancer"
]
},
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.9.19"
"version": "3.10.14"
}
},
"nbformat": 4,
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1 change: 0 additions & 1 deletion 01_materials/notebooks/README.md
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@@ -1,3 +1,2 @@

This folder contains Jupyter notebooks and datasets (CSV's) that correspond to the slides presented in each session. Each notebook is designed to illustrate and expand on the concepts discussed in the slides.

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