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e2e-k3d.yml
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name: E2E test (on kubernetes)
on:
workflow_dispatch:
push:
paths:
- "website/**"
- "backend/**"
- "kubernetes/**"
- "preprocessing/**"
- "deploy.py"
- ".github/workflows/e2e-test.yml"
concurrency:
group: ci-${{ github.ref }}-e2e-k3d
cancel-in-progress: true
jobs:
k3d-e2e:
permissions:
packages: read
contents: read
checks: read
runs-on: ubuntu-latest
steps:
- name: Checkout repository
uses: actions/checkout@v4
- name: Install k3d
run: |
curl -s https://raw.githubusercontent.com/rancher/k3d/main/install.sh | bash
- name: Create k3d cluster
run: |
./deploy.py cluster
- name: Test helm template
uses: WyriHaximus/github-action-helm3@v3
with:
exec: helm template does-not-matter ./kubernetes/loculus > defaultTemplate.yaml
- name: Upload default helm template
uses: actions/upload-artifact@v4
with:
name: default-helm-template
path: defaultTemplate.yaml
- uses: actions/setup-node@v4
with:
node-version: 20
- name: Cache .npm
uses: actions/cache@v4
with:
path: ~/.npm
key: ${{ runner.os }}-node-${{ hashFiles('website/**/package-lock.json') }}
- name: Install dependencies
run: cd website && npm i
- name: Get Installed Playwright Version
id: playwright-version
run: cd website && echo "PLAYWRIGHT_VERSION=$(node -e "console.log(require('./package-lock.json').packages['node_modules/@playwright/test'].version)")" >> $GITHUB_ENV
- name: Cache Playwright Browsers
uses: actions/cache@v4
id: playwright-cache
with:
path: ~/.cache/ms-playwright
key: ${{ runner.os }}-playwright-${{ env.PLAYWRIGHT_VERSION }}
- name: Install Playwright Browsers and System Dependencies
run: cd website && npx playwright install --with-deps
if: steps.playwright-cache.outputs.cache-hit != 'true'
- name: Install only System Dependencies
run: cd website && npx playwright install-deps
if: steps.playwright-cache.outputs.cache-hit == 'true'
- name: Wait for Backend Docker Image
uses: lewagon/[email protected]
with:
ref: ${{ github.ref }}
check-name: Build Backend Docker Image
repo-token: ${{ secrets.GITHUB_TOKEN }}
- name: Wait for Website Docker Image
uses: lewagon/[email protected]
with:
ref: ${{ github.ref }}
check-name: Build Website Docker Image
repo-token: ${{ secrets.GITHUB_TOKEN }}
- name: Deploy with helm
uses: WyriHaximus/github-action-helm3@v3
with:
exec: ./deploy.py helm --branch ${{ github.ref_name }} --dockerconfigjson ${{ secrets.GHCR_DOCKER_CONFIG }}
- name: Wait for the pods to be ready
run: ./.github/scripts/wait_for_pods_to_be_ready.py
- name: Sleep for 20 secs
run: sleep 20
- name: Run E2E test
run: cd website && npm run e2e
- uses: actions/upload-artifact@v4
if: ${{ failure() }}
with:
name: playwright-report
path: website/playwright-report/
retention-days: 30
- name: List running pods
if: ${{ !cancelled() }}
run: kubectl get pods --all-namespaces
- name: Describe pods
if: ${{ !cancelled() }}
run: kubectl describe pods -l app=loculus -n loculus
- name: Show events
if: ${{ !cancelled() }}
run: kubectl get events -n loculus
- name: Save logs from all containers to file
if: ${{ !cancelled() }}
run: ./.github/scripts/collect_kubernetes_logs.sh
- name: Upload Kubernetes logs
if: ${{ !cancelled() }}
uses: actions/upload-artifact@v4
with:
name: kubernetes-logs
path: kubernetes_logs/