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Release 0.5.0#122

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loli merged 67 commits intomasterloli/medpy:masterfrom Release_0.5.0loli/medpy:Release_0.5.0Copy head branch name to clipboardApr 3, 2024

Commits

Commits on Dec 15, 2023

• Black formatting & pre-commit hooks (#119)

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• Specify black line length is 88 characters

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• Merge pull request #120 from loli/black_ll

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• Bumped up release version

  

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• Fixed imports

  

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• Addressed depreciations and removals

  

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• Added release instructions

  

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• Use conda-forge instead of bioconda

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• Add link to pre-commit

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• Updated to find new libboost_python naming convention

  

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• Fixed tests and dealt with all depreciations and errors

  

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Commits on Jan 27, 2024

• Upped the requirement versions

  

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• Added new python versions to pypi classifiers

  

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• Updated main readme

  

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• Updated PyPi readme

  

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• Tested and updated notebooks

  

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• Added treatment for bool images on save#

  

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• Update two scripts to work with new libs

  

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• doc: removed links to non existant notebooks

  

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• Bettercodehub not functional anymore. Removed.

  

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• Removed .gitmodules as dockerfiles are to be retired

  

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• Removed docker folder and all mentions

  

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• fixe deprecation warning

  

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• Fixed deprecation warning

  

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• Fixed typo

  

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• Updated setup.py to hold extra sections for tests and more

  

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• Readmes updated and beautified

  

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• Limited python versions

  

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• Added pre-commit action (#124)

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• Create build-test.yml (#125)

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• Update build-test.yml

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• Create build-test-gc.yml (#126)

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• Update build-test-gc.yml

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• Update build-test-gc.yml

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• Update build-test-gc.yml (#127)

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• Updated manifest files

  

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• Changed pytest import mode to use installed package if available

  

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• Update build-test-gc.yml

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• Improvced and cleaned workflows

  

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• Create python-publish.yml (#128)

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• Added MacOS test build workflow

  

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• Update build-test-gc.yml

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• Update build-test-gc.yml

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• Update build-test-gc.yml

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• Update build-test-gc.yml

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Commits on Jan 28, 2024

• Improved workflows

  

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• Bugfix in workflows

  

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• Bugfix in workflows

  

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Commits on Feb 3, 2024

• updated dependencies

  

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• Updated workflows

  

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• Skip tests on draft releases

  

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• Joined build and test publish worksflows

  

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• Increase version of download artifact action

  

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• Remove obsolete workflow publish test

  

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• Change to build source dist only

  

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• More detailed instructions

  

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• Removed generated MANIFEST file

  

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• Added newline for better layout

  

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• Removed test to PyPy compiler, instead using try/catch

  

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• Updated ublishing workflow and documented.

  

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• Added warning to AIDiff that rescaling required beforehand

  

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• fixed docstring section headers

  

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• deleted extensions and themes delivered with package

  

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• improved docstrings

  

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• Updated doc rst files

  

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• Doc update and dependencies

  

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• Docs finalized

  

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