3D Green Function generation and extraction software.

'Quick'-Install

For extraction only:

Make environment

conda create -n gf "python=3.10" numpy scipy matplotlib h5py

activate

conda activate gf

and install

cd path/to/GF3D
pip install -e .

For generation:

For post-processing the following pacakges need to be installed by hand after numpy, scipy and matplotlib have been installed:

mpi4py

export MPICC=$(which mpicc)
python -m pip install mpi4py

h5py

you need to compile HDF5 with parallel i/o support.

# Summit
export HDF5_DIR=/gpfs/alpine/geo111/scratch/lsawade/SGT/SpecfemMagic/packages/hdf5/build/

# Traverse
export HDF5_DIR=/scratch/gpfs/lsawade/SpecfemMagic/packages/hdf5/build/

CC="mpicc" HDF5_MPI="ON" HDF5_DIR=${HDF5_DIR} pip install --no-binary=h5py --no-cache-dir h5py

adios2

You need to compile adios as well for reading the Specfem output files.

conda develop path/to/adios-install-dir/lib/python3.10/site-packages/adios2