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Restore previous pipetask run-qbb behavior.
It's not clear whether previous authors were aware that passing clobberOutputs=True and skipExisting=True in CmdLineFwk was previously doing nothing because SingleQuantumExecution executor shortcutted checkExistingOutputs when there was only a limited butler. But while it looks safe from a correctness standpoint to just drop that shortcut and let those options work as intended, that could mean a lot of new file existence checks in BPS jobs, so it's safer for this ticket to focus on enabling clobbering and skip-existing for other LimitedButlers while leaving run-qbb behavior strictly unchanged.
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