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Merge pull request #344 from lsst/tickets/DM-39661
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DM-39661: Rename ButlerQuantumContext to QuantumContext
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timj authored Jun 23, 2023
2 parents edb96d1 + 00ff1fe commit 806fb6d
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Showing 11 changed files with 240 additions and 30 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -146,7 +146,7 @@ def __init__(self, config: pexConfig.Config, initInput: Mapping, *args, **kwargs

def runQuantum(
self,
butlerQC: pipeBase.ButlerQuantumContext,
butlerQC: pipeBase.QuantumContext,
inputRefs: pipeBase.InputQuantizedConnection,
outputRefs: pipeBase.OutputQuantizedConnection,
):
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3 changes: 3 additions & 0 deletions doc/changes/DM-39661.feature.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
* New class ``ExecutionResources`` has been created to record the number of cores and memory that has been allocated for the execution of a quantum.
* ``QuantumContext`` (newly renamed from ``ButlerQuantumContext``) now has a ``resources`` property that can be queried by a task in ``runQuantum``.
This can be used to tell the task that it can use multiple cores or possibly should make a more efficient use of the available memory resources.
2 changes: 2 additions & 0 deletions doc/changes/DM-39661.removal.rst
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
``ButlerQuantumContext`` has been renamed to ``QuantumContext``.
This reflects the additional functionality it now has.
2 changes: 1 addition & 1 deletion python/lsst/pipe/base/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,9 @@
from ._dataset_handle import *
from ._instrument import *
from ._observation_dimension_packer import *
from ._quantumContext import *
from ._status import *
from ._task_metadata import *
from .butlerQuantumContext import *
from .config import *
from .connections import *
from .executionButlerBuilder import *
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Original file line number Diff line number Diff line change
Expand Up @@ -24,11 +24,15 @@
"""Module defining a butler like object specialized to a specific quantum.
"""

__all__ = ("ButlerQuantumContext",)
__all__ = ("ButlerQuantumContext", "ExecutionResources", "QuantumContext")

from collections.abc import Sequence
import numbers
from collections.abc import Callable, Sequence
from dataclasses import dataclass
from typing import Any

import astropy.units as u
from deprecated.sphinx import deprecated
from lsst.daf.butler import DatasetRef, DimensionUniverse, LimitedButler, Quantum
from lsst.utils.introspection import get_full_type_name
from lsst.utils.logging import PeriodicLogger, getLogger
Expand All @@ -39,8 +43,120 @@
_LOG = getLogger(__name__)


class ButlerQuantumContext:
"""A Butler-like class specialized for a single quantum.
@dataclass(init=False, frozen=True)
class ExecutionResources:
"""A description of the resources available to a running quantum.
Parameters
----------
num_cores : `int`, optional
The number of cores allocated to the task.
max_mem : `~astropy.units.Quantity`, `numbers.Real`, `str`, or `None`,\
optional
The amount of memory allocated to the task. Can be specified
as byte-compatible `~astropy.units.Quantity`, a plain number,
a string with a plain number, or a string representing a quantity.
If `None` no limit is specified.
default_mem_units : `astropy.units.Unit`, optional
The default unit to apply when the ``max_mem`` value is given
as a plain number.
"""

num_cores: int = 1
"""The maximum number of cores that the task can use."""

max_mem: u.Quantity | None = None
"""If defined, the amount of memory allocated to the task.
"""

def __init__(
self,
*,
num_cores: int = 1,
max_mem: u.Quantity | numbers.Real | str | None = None,
default_mem_units: u.Unit = u.B,
):
# Create our own __init__ to allow more flexible input parameters
# but with a constrained dataclass definition.
if num_cores < 1:
raise ValueError("The number of cores must be a positive integer")

object.__setattr__(self, "num_cores", num_cores)

mem: u.Quantity | None = None

if max_mem is None or isinstance(max_mem, u.Quantity):
mem = max_mem
elif max_mem == "":
# Some command line tooling can treat no value as empty string.
pass
else:
parsed_mem = None
try:
parsed_mem = float(max_mem)
except ValueError:
pass
else:
mem = parsed_mem * default_mem_units

if mem is None:
mem = u.Quantity(max_mem)

if mem is not None:
# Force to bytes. This also checks that we can convert to bytes.
mem = mem.to(u.B)

object.__setattr__(self, "max_mem", mem)

def __deepcopy__(self, memo: Any) -> ExecutionResources:
"""Deep copy returns itself because the class is frozen."""
return self

def _reduce_kwargs(self) -> dict[str, Any]:
"""Return a dict of the keyword arguments that should be used
by `__reduce__`.
This is necessary because the dataclass is defined to be keyword
only and we wish the default pickling to only store a plain number
for the memory allocation and not a large Quantity.
Returns
-------
kwargs : `dict`
Keyword arguments to be used when pickling.
"""
kwargs: dict[str, Any] = {"num_cores": self.num_cores}
if self.max_mem is not None:
# .value is a numpy float. Cast it to a python int since we
# do not want fractional bytes. The constructor ensures that this
# uses units of byte so we do not have to convert.
kwargs["max_mem"] = int(self.max_mem.value)
return kwargs

@staticmethod
def _unpickle_via_factory(
cls: type[ExecutionResources], args: Sequence[Any], kwargs: dict[str, Any]
) -> ExecutionResources:
"""Unpickle something by calling a factory.
Allows unpickle using `__reduce__` with keyword
arguments as well as positional arguments.
"""
return cls(**kwargs)

def __reduce__(
self,
) -> tuple[
Callable[[type[ExecutionResources], Sequence[Any], dict[str, Any]], ExecutionResources],
tuple[type[ExecutionResources], Sequence[Any], dict[str, Any]],
]:
"""Pickler."""
return self._unpickle_via_factory, (self.__class__, [], self._reduce_kwargs())


class QuantumContext:
"""A Butler-like class specialized for a single quantum along with
context information that can influence how the task is executed.
Parameters
----------
Expand All @@ -49,10 +165,12 @@ class ButlerQuantumContext:
quantum : `lsst.daf.butler.core.Quantum`
Quantum object that describes the datasets which will be get/put by a
single execution of this node in the pipeline graph.
resources : `ExecutionResources`, optional
The resources allocated for executing quanta.
Notes
-----
A ButlerQuantumContext class wraps a standard butler interface and
A `QuantumContext` class wraps a standard butler interface and
specializes it to the context of a given quantum. What this means
in practice is that the only gets and puts that this class allows
are DatasetRefs that are contained in the quantum.
Expand All @@ -63,8 +181,16 @@ class ButlerQuantumContext:
execution.
"""

def __init__(self, butler: LimitedButler, quantum: Quantum):
resources: ExecutionResources

def __init__(
self, butler: LimitedButler, quantum: Quantum, *, resources: ExecutionResources | None = None
):
self.quantum = quantum
if resources is None:
resources = ExecutionResources()
self.resources = resources

self.allInputs = set()
self.allOutputs = set()
for refs in quantum.inputs.values():
Expand Down Expand Up @@ -260,7 +386,7 @@ def _checkMembership(self, ref: list[DatasetRef] | DatasetRef, inout: set) -> No
"""Check if a `~lsst.daf.butler.DatasetRef` is part of the input
`~lsst.daf.butler.Quantum`.
This function will raise an exception if the `ButlerQuantumContext` is
This function will raise an exception if the `QuantumContext` is
used to get/put a `~lsst.daf.butler.DatasetRef` which is not defined
in the quantum.
Expand All @@ -287,3 +413,15 @@ def dimensions(self) -> DimensionUniverse:
repository (`~lsst.daf.butler.DimensionUniverse`).
"""
return self.__butler.dimensions


@deprecated(
reason="ButlerQuantumContext has been renamed to QuantumContext and been given extra functionality. "
"Please use the new name. Will be removed after v27.",
version="v26",
category=FutureWarning,
)
class ButlerQuantumContext(QuantumContext):
"""Deprecated version of `QuantumContext`."""

pass
2 changes: 1 addition & 1 deletion python/lsst/pipe/base/config.py
Original file line number Diff line number Diff line change
Expand Up @@ -230,7 +230,7 @@ def applyConfigOverrides(
pipelineConfigs : `~collections.abc.Iterable` of `ConfigIR`
An iterable of `ConfigIR` objects that contain overrides
to apply to this config instance.
parameters : `ParametersIR`
parameters : `~.pipelineIR.ParametersIR`
Parameters defined in a Pipeline which are used in formatting
of config values across multiple `Task`\ s in a pipeline.
label : `str`
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21 changes: 16 additions & 5 deletions python/lsst/pipe/base/pipelineIR.py
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,16 @@
# along with this program. If not, see <http://www.gnu.org/licenses/>.
from __future__ import annotations

__all__ = ("ConfigIR", "ContractError", "ContractIR", "ImportIR", "PipelineIR", "TaskIR", "LabeledSubset")
__all__ = (
"ConfigIR",
"ContractError",
"ContractIR",
"ImportIR",
"LabeledSubset",
"ParametersIR",
"PipelineIR",
"TaskIR",
)

import copy
import enum
Expand Down Expand Up @@ -185,9 +194,11 @@ def to_primitives(self) -> dict[str, list[str] | str]:


@dataclass
class ParametersIR:
"""Intermediate representation of parameters that are global to a pipeline
class ParametersIR: # noqa: D405,D406,D407,D214 ("parameters" in code block)
"""Intermediate representation of parameters that are global to a pipeline.
Notes
-----
These parameters are specified under a top level key named ``parameters``
and are declared as a yaml mapping. These entries can then be used inside
task configuration blocks to specify configuration values. They may not be
Expand Down Expand Up @@ -279,12 +290,12 @@ def formatted(self, parameters: ParametersIR) -> ConfigIR:
Parameters
----------
parameters : ParametersIR
parameters : `ParametersIR`
Object that contains variable mappings used in substitution.
Returns
-------
config : ConfigIR
config : `ConfigIR`
A new ConfigIR object formatted with the input parameters
"""
new_config = copy.deepcopy(self)
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8 changes: 4 additions & 4 deletions python/lsst/pipe/base/pipelineTask.py
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@

from lsst.utils.logging import LsstLogAdapter

from .butlerQuantumContext import ButlerQuantumContext
from ._quantumContext import QuantumContext
from .config import PipelineTaskConfig
from .struct import Struct

Expand All @@ -59,7 +59,7 @@ class PipelineTask(Task):
sub-class) where all necessary I/O is performed, it reads all input data
from data butler into memory, calls `run()` method with that data, examines
returned `Struct` object and saves some or all of that data back to data
butler. `runQuantum()` method receives a `ButlerQuantumContext` instance to
butler. `runQuantum()` method receives a `QuantumContext` instance to
facilitate I/O, a `InputQuantizedConnection` instance which defines all
input `lsst.daf.butler.DatasetRef`, and a `OutputQuantizedConnection`
instance which defines all the output `lsst.daf.butler.DatasetRef` for a
Expand Down Expand Up @@ -151,7 +151,7 @@ def run(self, input, calib):

def runQuantum(
self,
butlerQC: ButlerQuantumContext,
butlerQC: QuantumContext,
inputRefs: InputQuantizedConnection,
outputRefs: OutputQuantizedConnection,
) -> None:
Expand All @@ -160,7 +160,7 @@ def runQuantum(
Parameters
----------
butlerQC : `ButlerQuantumContext`
butlerQC : `QuantumContext`
A butler which is specialized to operate in the context of a
`lsst.daf.butler.Quantum`.
inputRefs : `InputQuantizedConnection`
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6 changes: 3 additions & 3 deletions python/lsst/pipe/base/testUtils.py
Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@
)
from lsst.pipe.base.connectionTypes import BaseConnection, DimensionedConnection

from .butlerQuantumContext import ButlerQuantumContext
from ._quantumContext import QuantumContext

if TYPE_CHECKING:
from .config import PipelineTaskConfig
Expand Down Expand Up @@ -302,14 +302,14 @@ def runTestQuantum(
If ``mockRun`` is set, the mock that replaced ``run``. This object can
be queried for the arguments ``runQuantum`` passed to ``run``.
"""
butlerQc = ButlerQuantumContext(butler, quantum)
butlerQc = QuantumContext(butler, quantum)
# This is a type ignore, because `connections` is a dynamic class, but
# it for sure will have this property
connections = task.config.ConnectionsClass(config=task.config) # type: ignore
inputRefs, outputRefs = connections.buildDatasetRefs(quantum)
if mockRun:
with unittest.mock.patch.object(task, "run") as mock, unittest.mock.patch(
"lsst.pipe.base.ButlerQuantumContext.put"
"lsst.pipe.base.QuantumContext.put"
):
task.runQuantum(butlerQc, inputRefs, outputRefs)
return mock
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4 changes: 2 additions & 2 deletions python/lsst/pipe/base/tests/mocks/_pipeline_task.py
Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,7 @@
_LOG = logging.getLogger(__name__)

if TYPE_CHECKING:
from ...butlerQuantumContext import ButlerQuantumContext
from ..._quantumContext import QuantumContext


def mock_task_defs(
Expand Down Expand Up @@ -238,7 +238,7 @@ def __init__(

def runQuantum(
self,
butlerQC: ButlerQuantumContext,
butlerQC: QuantumContext,
inputRefs: InputQuantizedConnection,
outputRefs: OutputQuantizedConnection,
) -> None:
Expand Down
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