Predicting Gene Expression Levels from Histone Modification Signals with Convolutional Recurrent Neural Networks

Paper | project page

Datasets

The dataset can be downloaded from the link. We encourage those interested to visit the original sources and site the appropriate references if they use the data.

Script

Please change the path of dataset and cellType.txt accordingly in the file CRNN.py

python CRNN.py

Citation

If you find the code and dataset useful in your resarch, please cite the following paper,

@incollection{zhu2017predicting,
  title={Predicting Gene Expression Levels from Histone Modification Signals with Convolutional Recurrent Neural Networks},
  author={Zhu, Lingyu and Kesseli, Juha and Nykter, Matti and Huttunen, Heikki},
  booktitle={EMBEC \& NBC 2017},
  pages={555--558},
  year={2017},
  publisher={Springer}
}