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41 changes: 41 additions & 0 deletions CITATION.cff
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cff-version: 1.2.0
message: "If you use this software, please cite both the article from preferred-citation and the software itself."
title: "Structure-based Approach to Transfer ELN Protocols into RO-Crates"
authors:
- given-names: Max
family-names: Schröder
orcid: "https://orcid.org/0000-0003-1522-494X"
- given-names: Frank
family-names: Krüger
orcid: "https://orcid.org/0000-0002-7925-3363"
repository-code: https://github.com/m6121/Structure-based-ELN2LOD
type: software
license: CC-BY-4.0
version: 1.0
preferred-citation:
authors:
- given-names: Max
family-names: Schröder
orcid: "https://orcid.org/0000-0003-1522-494X"
- given-names: Susanne
family-names: Staehlke
orcid: "https://orcid.org/0000-0002-0251-8263"
- given-names: Paul
family-names: Groth
orcid: "https://orcid.org/0000-0003-0183-6910"
- given-names: J. Barbara
family-names: Nebe
orcid: "https://orcid.org/0000-0003-2662-0905"
- given-names: Sascha
family-names: Spors
orcid: "https://orcid.org/0000-0001-7225-9992"
- given-names: Frank
family-names: Krüger
orcid: "https://orcid.org/0000-0002-7925-3363"
title: "Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation"
type: article
journal: "Journal of Biomedical Semantics"
volume: 13
number: 4
year: 2022
doi: 10.1186/s13326-021-00257-x
13 changes: 9 additions & 4 deletions README.md
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This repository contains the source code of a structure-based approach to transfer Electronic Lab Notebook (ELN) protocols including research data into a [Research Object Crates (RO-Crates)](https://w3id.org/ro/crate/1.1) bundle whereas the semantic model rerpresents retrospective provenance about the research data.

**Note that this is a research prototype and may contain bugs and errors, i.e., do not use this in production.**
**Note that this software is a research prototype and may contain bugs and errors, i.e., do not use this in production.**

The approach has been used in order to create the RO-Crates at: https://github.com/SFB-ELAINE/Ca-imaging-RO-Crate

The approach is described in full detail in this article:

Max Schröder, Susanne Staehlke, Paul Groth, J. Barbara Nebe, Sascha Spors, Frank Krüger.<br>
**Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.**<br>
Journal of Biomedical Semantics 13, 4 (2022).<br>
https://doi.org/10.1186/s13326-021-00257-x

## License

[![Creative Commons License](https://i.creativecommons.org/l/by/4.0/88x31.png)](http://creativecommons.org/licenses/by/4.0/)

This work is licensed under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/).

In order to reference the GitHub repository, please attribute this as:

Max Schröder and Frank Krüger. “Structure-based Approach to Transfer ELN Protocols into RO-Crates,” https://github.com/m6121/Structure-based-ELN2LOD
In order to reference this software, please consider the information in the [CITATION.cff](CITATION.cff) file.

## Usage

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