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Resistance association testing for specific variants #685

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alimanfoo opened this issue Dec 4, 2024 · 0 comments
Open

Resistance association testing for specific variants #685

alimanfoo opened this issue Dec 4, 2024 · 0 comments
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BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request

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@alimanfoo
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alimanfoo commented Dec 4, 2024

Umbrella issue to review and explore methods for testing association between specific variants and a resistance phenotype. E.g., testing association with a specific known resistance marker, such as Vgsc L995F or copy number at Cyp6aa1. The goal being to propose some functions to implement in malariagen_data.

For genome-wide association testing methods see separate issues #679, #683, #684.

@alimanfoo alimanfoo added the BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). label Dec 4, 2024
@leehart leehart added the enhancement New feature or request label Dec 9, 2024
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Labels
BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
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