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63 Open 289 Closed
63 Open 289 Closed
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Issues list

Add tests on simulated data for karyotype low priority
#700 opened Dec 11, 2024 by jonbrenas
Add karyotype to the docs documentation Improvements or additions to documentation high priority
#699 opened Dec 11, 2024 by jonbrenas
1
@jonbrenas
Moving karyotype to anoph low priority
#698 opened Dec 11, 2024 by jonbrenas
@jonbrenas
Moving inversion tags to gcs postponed
#697 opened Dec 11, 2024 by jonbrenas
Occasional failures with test_g123_...[af1_sim] bug Something isn't working
#695 opened Dec 10, 2024 by leehart
Add a "triage" label to new issues low hanging fruit 🍎 maintenance
#693 opened Dec 10, 2024 by leehart
Pairwise FST function running time performance
#692 opened Dec 9, 2024 by KellyLBennett
1
Refactoring karyotype maintenance
#689 opened Dec 6, 2024 by jonbrenas
1
Resistance association testing for specific variants BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#685 opened Dec 4, 2024 by alimanfoo
Genome-wide association testing with haplotype data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#684 opened Dec 4, 2024 by alimanfoo
Genome-wide association testing with CNV data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#683 opened Dec 4, 2024 by alimanfoo
1
Faster CI maintenance performance
#682 opened Dec 3, 2024 by alimanfoo
3
Support Python 3.13 / Numpy 2.1 maintenance
#681 opened Dec 3, 2024 by alimanfoo
1
Genome-wide association testing with SNP data BMGF-062921 Work supported by BMGF grant INV-062921 (EAVeS). enhancement New feature or request
#679 opened Dec 3, 2024 by alimanfoo
Plot frequencies as pie charts on a map enhancement New feature or request
#678 opened Dec 3, 2024 by alimanfoo
2
cnv_discordant_read_calls has a contig param but supports contigs maintenance usability
#674 opened Nov 29, 2024 by leehart
@leehart
3
Occasional test failure in test_plot_frequencies_time_series_with_taxa bug Something isn't working
#671 opened Nov 28, 2024 by leehart
@leehart
1
User requirements survey enhancement New feature or request high priority
#669 opened Nov 26, 2024 by leehart
@cclarkson
2
plot_frequencies_heatmap is not in the correct file maintenance question Further information is requested
#664 opened Nov 25, 2024 by jonbrenas
@jonbrenas
3
Missing CNV allele calls are reported as CNV present bug Something isn't working
#660 opened Nov 21, 2024 by EricRLucas
@leehart
5
Karyotype frequencies enhancement New feature or request high priority
#652 opened Nov 13, 2024 by alimanfoo
@jonbrenas
3
Bokeh genome plots flip direction of X axis bug Something isn't working
#648 opened Oct 24, 2024 by alimanfoo
1
Better defaults for chunks parameters performance
#629 opened Sep 26, 2024 by alimanfoo
Out of core PCA scalability Issues preventing running functions on larger datasets.
#607 opened Sep 17, 2024 by alimanfoo
1
Allow multiple snp_transcripts in plot_diplotype_clustering_advanced() enhancement New feature or request high priority
#600 opened Sep 13, 2024 by sanjaynagi
1
@sanjaynagi
ProTip! What’s not been updated in a month: updated:<2024-11-27.