Replace Miniconda with Miniforge #183
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| name: conda | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| strategy: | |
| matrix: | |
| os: [ "macos-latest", "ubuntu-latest"] | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install conda and solve/verify conda environment | |
| run: | | |
| ./install-conda.sh | |
| - name: Run tests | |
| run: | | |
| source ./env.sh | |
| conda list | |
| python imports.py | |
| samtools --version | |
| bcftools --version | |
| tabix --version | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: environment-pinned-${{ matrix.os }} | |
| path: environment-pinned-${{ matrix.os }}.yml | |
| merge: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| steps: | |
| - name: Merge artifacts | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: environment-pinned | |
| pattern: environment-pinned-* |