[MAINT] Improve test of cleaning in maskers (#5059) #86
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| --- | |
| # | |
| # Most of this workflow is skipped if "[skip test]" is in the commit message. | |
| name: test | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - '*' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| # Force to use color | |
| env: | |
| FORCE_COLOR: true | |
| jobs: | |
| check_skip_flags: | |
| name: Check skip flags | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Get repo | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ github.event.pull_request.head.sha }} | |
| - name: Check head git commit message | |
| run: | | |
| headCommitMsg=$(git show -s --format=%s) | |
| if [[ $headCommitMsg == *"[skip test]"* ]]; then | |
| echo "skipping tests" | |
| exit 1 | |
| fi | |
| test_and_coverage: | |
| needs: check_skip_flags | |
| if: github.repository == 'nilearn/nilearn' | |
| name: 'Test with ${{ matrix.py }} on ${{ matrix.os }}: ${{ matrix.description }}' | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| description: [latest dependencies] | |
| py: ['3.13', '3.12', '3.11', '3.10', '3.9'] | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| env: [plotting] | |
| include: | |
| - description: pre-release dependencies | |
| py: '3.13' | |
| os: ubuntu-latest | |
| env: pre | |
| # Using macos on the following as tests run faster on macos. | |
| # As 'no plotting' run fewer tests, this allows to fail event faster if using macos. | |
| - description: oldest dependencies - no plotting | |
| py: '3.9' | |
| os: macos-latest | |
| env: min | |
| - description: oldest dependencies - no plotly | |
| py: '3.9' | |
| os: macos-latest | |
| env: plot_min | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install the latest version of uv | |
| uses: astral-sh/setup-uv@v5 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.py }} | |
| allow-prereleases: true | |
| - name: Install tox | |
| run: uv tool install tox --with=tox-uv --with=tox-gh-actions | |
| - name: Show tox config | |
| run: tox c | |
| - name: Run test suite | |
| run: tox run --list-dependencies -e ${{ matrix.env }} -- nilearn | |
| - name: Upload test report | |
| if: success() || failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.os }}_${{ matrix.py }}_${{ matrix.description }}_report.html | |
| path: report.html | |
| - name: Upload coverage to CodeCov | |
| uses: codecov/codecov-action@v5 | |
| with: | |
| flags: ${{ matrix.os }}_${{ matrix.py }}_${{ matrix.env }} | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: success() |