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rwood-97 authored May 8, 2024
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# MapReader and non-geospatial images

## Worked Examples
### Worked Examples

- [classification_plant_phenotype](./classification_plant_phenotype)
* **Goal:** train/fine-tune PyTorch CV classifiers on plant patches in images (plant phenotyping example).
* **Dataset:** Example images taken from the openly accessible `CVPPP2014_LSV_training_data` dataset available from https://www.plant-phenotyping.org/datasets-download.
* **Data access:** locally stored
* **Annotations** are done on plant patches (i.e., slices of each plant image).
* **Classifier:** train/fine-tuned PyTorch CV models.

*
- [classification_mnist](./classification_mnist)
* **Goal:** train/fine-tune PyTorch CV classifiers on MNIST.
* **Dataset:** Example images taken from http://yann.lecun.com/exdb/mnist/.
* **Data access:** locally stored
* **Annotations** are done on whole MNIST images, **not** on patches/slices of those images.
* **Classifier:** train/fine-tuned PyTorch CV models.
| Worked Example Name | Task Type | Input Type | Link to Input Data | Brief Description of What Notebook Does | Output Type | Created By | Model | Paper |
| ------------- | ------------- | ------------- | ------------- | ------------- | ------------- | ------------- | ------------- | ------------- |
| classification_plant_phenotype | Patch Classification | Plant Images | https://www.plant-phenotyping.org/datasets-download | Fine-tune PyTorch CV classifiers on plant patches in images | MapReader patch classifications in csv format | Evangeline Corcoran, Kasra Hosseini | TBC | TBC |
| classification_mnist | Image Classification | MNIST | http://yann.lecun.com/exdb/mnist/ | train/fine-tune PyTorch CV classifiers on MNIST | MapReader whole image classifications in csv format | Kasra Hosseini | None | (no paper) |

| Task Name | Input Type | Link to Input Data | Brief Description of What Notebook Does | Output Type | Created By | Annotations | Model |
| ------------- | ------------- | ------------- | ------------- | ------------- | ------------- | ------------- | ------------- |
| Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell |
| Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell | Content Cell |
#### How can I contribute a worked example?
Open a ["Documentation Update"](https://github.com/Living-with-machines/MapReader/issues/new?assignees=&labels=documentation&projects=&template=documentation_update.md&title=) ticket and pitch your contribution to the team!

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