run all

mapreader/_version.py

@@ -142,7 +142,9 @@ def versions_from_parentdir(parentdir_prefix, root, verbose):
 
     if verbose:
         print(
-            "Tried directories {} but none started with prefix {}".format(str(rootdirs), parentdir_prefix)
+            "Tried directories {} but none started with prefix {}".format(
+                str(rootdirs), parentdir_prefix
+            )
         )
     raise NotThisMethod("rootdir doesn't start with parentdir_prefix")
 

mapreader/classify/classifier.py

@@ -565,9 +565,7 @@ def unfreeze_layers(self, layers_to_unfreeze: list[str] | None = None):
                 elif (layer[-1] != "*") and (layer == name):
                     param.requires_grad = True
 
-    def only_keep_layers(
-        self, only_keep_layers_list: list[str] | None = None
-    ) -> None:
+    def only_keep_layers(self, only_keep_layers_list: list[str] | None = None) -> None:
         """
         Only keep the specified layers (``only_keep_layers_list``) for
         gradient computation during the backpropagation.

mapreader/classify/datasets.py

@@ -163,9 +163,7 @@ def __len__(self) -> int:
         """
         return len(self.patch_df)
 
-    def __getitem__(
-        self, idx: int | torch.Tensor
-    ) -> tuple[torch.Tensor, str, int]:
+    def __getitem__(self, idx: int | torch.Tensor) -> tuple[torch.Tensor, str, int]:
         """
         Return the image, its label and the index of that label at the given index in the dataset.
 

mapreader/download/tile_loading.py

@@ -172,11 +172,7 @@ def _update_progressbar(self, share: float):
 
         print(
             "\r",
-            f"{share * 100:3.0f}%"
-            + "|"
-            + "■" * visible
-            + "□" * invisible
-            + "|",
+            f"{share * 100:3.0f}%" + "|" + "■" * visible + "□" * invisible + "|",
             end="",
         )
 

mapreader/download/tile_merging.py

@@ -129,7 +129,7 @@ def _load_tile_size(self, grid_bb: GridBoundingBox):
             logger.warning("Image has missing tiles in bottom left corner.")
             try:
                 start_image = self._load_image_to_grid_cell(grid_bb.upper_corner)
-            except FileNotFoundError as err:
+            except FileNotFoundError:
                 logger.warning("Image has missing tiles in upper right corner.")
                 raise FileNotFoundError(
                     "[ERROR] Image is missing tiles for both lower left and upper right corners."
@@ -142,9 +142,7 @@ def _load_tile_size(self, grid_bb: GridBoundingBox):
         tile_size = img_size[0]
         return tile_size
 
-    def merge(
-        self, grid_bb: GridBoundingBox, file_name: str | None = None
-    ) -> bool:
+    def merge(self, grid_bb: GridBoundingBox, file_name: str | None = None) -> bool:
         """Merges cells contained within GridBoundingBox.
 
         Parameters
@@ -196,9 +194,7 @@ def merge(
         merged_image.save(out_path, self.img_output_format[1])
         success = True if os.path.exists(out_path) else False
         if success:
-            logger.info(
-                f"Merge successful! The image has been stored at '{out_path}'"
-            )
+            logger.info(f"Merge successful! The image has been stored at '{out_path}'")
         else:
             logger.warning(f"Merge unsuccessful! '{out_path}' not saved.")
 

versioneer.py

@@ -368,7 +368,9 @@ def get_root():
         vsr_dir = os.path.normcase(os.path.splitext(versioneer_py)[0])
         if me_dir != vsr_dir and "VERSIONEER_PEP518" not in globals():
             print(
-                "Warning: build in {} is using versioneer.py from {}".format(os.path.dirname(my_path), versioneer_py)
+                "Warning: build in {} is using versioneer.py from {}".format(
+                    os.path.dirname(my_path), versioneer_py
+                )
             )
     except NameError:
         pass
@@ -1444,7 +1446,9 @@ def versions_from_parentdir(parentdir_prefix, root, verbose):
 
     if verbose:
         print(
-            "Tried directories {} but none started with prefix {}".format(str(rootdirs), parentdir_prefix)
+            "Tried directories {} but none started with prefix {}".format(
+                str(rootdirs), parentdir_prefix
+            )
         )
     raise NotThisMethod("rootdir doesn't start with parentdir_prefix")