Refactor configs #66
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| name: test | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| jobs: | ||
| build: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Install Nextflow | ||
| run: | | ||
| curl -s https://get.nextflow.io | bash | ||
| sudo mv nextflow /usr/local/bin/ | ||
| - name: Run movp test | ||
| run: | | ||
| nextflow run marine-omics/movp -profile docker,test -r main --callers gatk | ||
| - name: Whereami | ||
| if: always() | ||
| run: | | ||
| pwd | ||
| ls -a | ||
| - name: Archive nextflow log | ||
| if: always() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: Nextflow logs | ||
| path: .nextflow.log | ||
