Fix shell path

marine-omics · Apr 2, 2024 · 4b65cd5 · 4b65cd5
1 parent 60bfac6
commit 4b65cd5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -91,7 +91,7 @@ workflow {
   ch_baicollection = ch_mapped_marked_bais.map{m,b -> b} | collect
   ch_chunk_vcfs = freebayes(ch_bamcollection,ch_baicollection,genome_fasta,genome_fai,ch_regions,file(params.populations)) | collect
 
-  freebayes_collect(ch_chunk_vcfs,"${projectDir}/bash/sort_vcf_files.sh")
+  freebayes_collect(ch_chunk_vcfs,"${projectDir}/shell/sort_vcf_files.sh")
 
 // bcftools
   mpileup_call(ch_bamcollection,ch_baicollection,genome_fasta,genome_fai)