Keep index from haplotype caller

marine-omics · Sep 23, 2024 · 94211c1 · 94211c1
1 parent edf08cc
commit 94211c1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/gatk.nf b/modules/gatk.nf
@@ -154,7 +154,7 @@ process gatk_haplotype_caller {
 
     script:
     def args = task.ext.args ?: ''
-    def outfile = "${bam.baseName}.g.vcf.gz"
+    def outfile = "${bam.baseName}.g.vcf.gz*"
 
     """