PPTC PDX Pie Generation

Authors:	Jo Lynne Rokita
Contact:	Jo Lynne Rokita ([email protected])
Organization:	CHOP
Status:	In-process
Date:	2025-01-11

Introduction

Here, we provide scripts to enable reproducible generation of Manuscript Figure 1: pie chart by PDX histology and assay.

Details

• install-packages.R
• create-pie.R
• pie-colors.txt
• pptc-pdx-clinical-web.txt

Software Requirements

R 3.4.3

Pipeline

# How to run:
# Download github repository in your home directory (~/)
git clone https://github.com/marislab/create-pptc-pdx-pie.git

# Run script to create pie chart
Rscript ~/create-pptc-pdx-pie/R/create-pie.R