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Releases: marschall-lab/panacus

New info command!

26 Sep 10:58
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What's Changed

  • feat: added info command to show basic stats of GFA file @heringerp @lucaparmigiani
  • feat: added info section to html output to show basic stats of graph @heringerp
  • fix: add MultiGzDecoder to allow working with .gz files with multiple blocks @sharkLoc
  • fix: fixed array out of bounds error caused by empty group @danydoerr
  • fix: ordered-histgrowth plots now show path names instead of indices @heringerp
  • fix: improved counting for nodes with overlap multiple include/exclude intervals @danydoerr
  • fix: solved overflow issue in hists @heringerp
  • doc: added examples @heringerp
  • doc: cleaned up README @heringerp
  • doc: improved help texts @heringerp

Full Changelog: 0.2.3...0.2.4

Improved visualization script

20 Oct 07:38
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Thanks to @subwaystation and @heringerp for their contributions to make panacus-visualize more generic, allowing to change the output format of the plot as well as providing an option to separate plots into multiple files.

Feature alarm!

04 Sep 08:55
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⚠️ This release is not backwards compatible with earlier versions ⚠️

This release introduces a view new features to panacus

  • can deal with (erroneously) duplicated edges, counts are no longer affected by it
  • accepts now gzip compressed GFA files (must end with .gz)
  • most commands now support to output stats for all features (bp, node, edge) at once
  • most commands support HTML output which produces a nice, self-contained, interactive report page

Bugfixes:

  • Fixes issues on malformatted path names (issue #6)

Bugfixes, bugfixes, bugfixes

09 Jun 14:57
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This release

  • fixes lots of bugs concerning subsetting/exclusion, ordered-histgrowth and table, and in the visualization script
  • has a new implementation for data structures used in ordered-histgrowth and table that are much more memory efficient and faster

0.2

19 May 20:53
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0.2

All new version, lots of new functionality and it's blazing fast, too!