This repository contains source code for the R/Bioconductor package QDNAseq.
To cite QDNAseq, please use:
Scheinin I, Sie D, Bengtsson H, van de Wiel MA, Olshen AB, van Thuijl HF, van
Essen HF, Eijk PP, Rustenburg F, Meijer GA, Reijneveld JC, Wesseling P, Pinkel
D, Albertson DG and Ylstra B (2014) DNA copy number analysis of fresh and
formalin-fixed specimens by shallow whole-genome sequencing with identification
and exclusion of problematic regions in the genome assembly. Genome
Research 24: 2022-2032
Repository QDNAseq contains two branches: master and release. Branch master contains the current Bioconductor development version, and branch release contains the current release version.
The release branch of repository QDNAseq is also mirrored in the QDNAseq-release repository as branch master. This is because the two repositories use the Bioconductor Git-SVN bridge to mirror changes to the Bioconductor SVN repository, and the bridge can only use branch master of each GitHub repository.
- R CMD check status:
- Bioconductor: Multipleplatform build/check report
- Travis CI:
- Test coverage status:
- Coveralls CI:
