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Remove t-SNE from docs
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stefanhahmann committed Dec 6, 2024
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## Dimensionality reduction

For visualizing high-dimensional data, e.g. in two dimensions, potentially getting more insights into your data, you can
reduce the dimensionality of the measurements, using these algorithms:
reduce the dimensionality of the measurements, using this algorithm:

* UMAP
* [Uniform Manifold Approximation Projection (UMAP)](https://arxiv.org/abs/1802.03426)
* [UMAP Python implementation](https://umap-learn.readthedocs.io/en/latest/)
* t-SNE
* [t-distributed Stochastic Neighbor Embedding (t-SNE)](https://lvdmaaten.github.io/tsne/)
* [t-SNE Python implementation](https://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html)

### Usage

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representation. This parameter controls how tightly UMAP is allowed to pack points together.
Further reading: [Minimum Distance](https://umap-learn.readthedocs.io/en/latest/parameters.html#min-dist).

#### t-SNE Parameters

* Perplexity: The perplexity is related to the number of nearest neighbors that are used in other manifold learning
algorithms. Larger datasets usually require a larger perplexity. The recommended range is between 5 and 50.
Further
reading: [Perplexity](https://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html#sklearn.manifold.TSNE).
* Maximum number of iterations: The maximum number of iterations for the optimization. The default is 1000. More
iterations will give more accurate results, but will also take longer to compute.
Further
reading: [Maximum Number of Iterations](https://scikit-learn.org/stable/modules/generated/sklearn.manifold.TSNE.html#sklearn.manifold.TSNE).

When you are done with the selection, click on `Compute`.
The resulting values will be added as additional columns to the selected table.

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