Check the Mastodon software page. Mastododon is an academic, open-source software for BioImage Analysis. It focusus on the automatic and interactive tracking of cells or organelles in microscopy images.
This repo contains the LaTeX source for its manual. It is automatically build using a Github action and you can get the latest pdf by cick on the orange badge above.
Tobias Pietzsch & Jean-Yves Tinevez.