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Merge pull request #65 from mastodon-sc/move-merge-two-projects-menu-…
…entry Move function merge two projects from Mastodon plugins menu to Fiji plugin menu
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src/main/java/org/mastodon/mamut/tomancak/MergeTwoProjects.java
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,57 @@ | ||
| package org.mastodon.mamut.tomancak; | ||
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| import org.mastodon.mamut.MainWindow; | ||
| import org.mastodon.mamut.ProjectModel; | ||
| import org.mastodon.mamut.io.ProjectCreator; | ||
| import org.mastodon.mamut.tomancak.merging.Dataset; | ||
| import org.mastodon.mamut.tomancak.merging.MergeDatasets; | ||
| import org.mastodon.mamut.tomancak.merging.MergingDialog; | ||
| import org.scijava.Context; | ||
| import org.scijava.command.Command; | ||
| import org.scijava.plugin.Parameter; | ||
| import org.scijava.plugin.Plugin; | ||
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| @Plugin( type = Command.class, menuPath = "Plugins > Tracking > Mastodon > Merge Two Projects" ) | ||
| public class MergeTwoProjects implements Command | ||
| { | ||
| @Parameter | ||
| private Context context; | ||
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| private MergingDialog mergingDialog; | ||
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| @Override | ||
| public void run() | ||
| { | ||
| if ( mergingDialog == null ) | ||
| { | ||
| mergingDialog = new MergingDialog( null ); | ||
| mergingDialog.onMerge( this::mergeProjects ); | ||
| } | ||
| mergingDialog.setVisible( true ); | ||
| } | ||
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| private void mergeProjects() | ||
| { | ||
| try | ||
| { | ||
| final String pathA = mergingDialog.getPathA(); | ||
| final String pathB = mergingDialog.getPathB(); | ||
| final double distCutoff = mergingDialog.getDistCutoff(); | ||
| final double mahalanobisDistCutoff = mergingDialog.getMahalanobisDistCutoff(); | ||
| final double ratioThreshold = mergingDialog.getRatioThreshold(); | ||
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| final Dataset dsA = new Dataset( pathA ); | ||
| final Dataset dsB = new Dataset( pathB ); | ||
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| final ProjectModel projectMerged = ProjectCreator.createProjectFromBdvFile( dsA.project().getDatasetXmlFile(), context ); | ||
| final MergeDatasets.OutputDataSet output = new MergeDatasets.OutputDataSet( projectMerged.getModel() ); | ||
| MergeDatasets.merge( dsA, dsB, output, distCutoff, mahalanobisDistCutoff, ratioThreshold ); | ||
| // start a new instance of Mastodon that shows the result of the merge operation | ||
| new MainWindow( projectMerged ).setVisible( true ); | ||
| } | ||
| catch ( final Exception e ) | ||
| { | ||
| e.printStackTrace(); | ||
| } | ||
| } | ||
| } |
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