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Achievement: Pull Sharkx3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor

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matt-sd-watson/README.md

Hi there 👋

I am a programmer/software developer with the LTRI at Mount Sinai (Toronto, Canada) working jointly with the Campbell and Jackson groups with experience in:

🐍 programming and software development
📌 Data science/analysis
📷 high dimensional multiplexed imaging
♋ cancer genomics
🐛 public health pathogen analysis
💻 single cell multi-omics


🔬 software development/programming, data analysis, CI/CD
🎓 MSc. Data Science, University of Texas at Austin
⏲️ cottaging, hiking, travelling, and the occasional 🍺




GitHub Streak


Check out some of my software packages!

🐟 rakaia
🍄 spora
🔀 nf-processes
📊 cytomarker


Public projects that I have contributed to!

🦔 pangolin
🌲 ggtree
🔎 civet/civet3
⚡ snipit
📶 infercnv
🐐 steinbock

Pinned Loading

  1. YuLab-SMU/ggtree YuLab-SMU/ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 852 173

  2. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 430 106

  3. spora spora Public

    🍄 spora: Streamlined Phylogenomic Outbreak Report Analysis

    Python 4

  4. FASTAfurious FASTAfurious Public

    🏎️ Bundled utilities for manipulation and integration of FASTA files

    Python 4

  5. broadinstitute/infercnv broadinstitute/infercnv Public

    Inferring CNV from Single-Cell RNA-Seq

    R 581 166

  6. camlab-bioml/cytomarker camlab-bioml/cytomarker Public

    Interactive design and validation of antibody panels using single-cell atlases

    R 2