fix snakePipes config

maxplanck-ie · Sep 10, 2024 · 16e04bd · 16e04bd
1 parent d730283
commit 16e04bd
Showing 1 changed file with 6 additions and 0 deletions.
diff --git a/snakePipes/snakePipes.py b/snakePipes/snakePipes.py
@@ -103,6 +103,12 @@ def parse_arguments():
         "in the workflow-specific yaml files and where conda is installed.",
     )
 
+    configParser.add_argument(
+        "--snakemakeProfile",
+        help="Path to custom snakemake profile file.",
+        default=defaults["snakemakeProfile"]
+    )
+
     configParser.add_argument(
         "--organismsDir",
         help="The directory where global organism YAML files are to be stored. Both "