Merge pull request nf-core#499 from athbaltzis/master

Update crg config for the proteinfold pipeline
maxulysse · May 4, 2023 · bbf065f · bbf065f
2 parents 450be9c + 8b6ff2b
commit bbf065f
Showing 1 changed file with 8 additions and 2 deletions.
diff --git a/conf/pipeline/proteinfold/crg.config b/conf/pipeline/proteinfold/crg.config
@@ -14,20 +14,26 @@ profiles {
                 cpus = 1
                 memory = "30 GB"
                 queue = params.use_gpu ? 'gpu' : 'long-sl7'
-                clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1' : '' ) }
+                clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
             }
             withName: 'COLABFOLD_BATCH' {
                 cpus = 1
                 memory = "30 GB"
                 queue = params.use_gpu ? 'gpu' : 'long-sl7'
-                clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1' : '' ) }
+                clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
             }
             withName: 'MMSEQS_COLABFOLDSEARCH' {
                 queue = 'mem_512'
                 memory = "100 GB"
                 cpus = 8
                 time = '12h'
             }
+            withName: 'RUN_ESMFOLD' {
+                cpus = 1
+                memory = "30 GB"
+                queue = params.use_gpu ? 'gpu' : 'long-sl7'
+                clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1,virtual_free=30G' : '' ) }
+            }
         }
     }
 }