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Merge pull request #1221 from adamrtalbot/nf-test-cicd #27

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Merge pull request #1221 from adamrtalbot/nf-test-cicd

Merge pull request #1221 from adamrtalbot/nf-test-cicd #27

Run time

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Job Run time
Check for changes
6s
Test HISAT2 with workflow parameters
0s
Test Pseudoaligners with workflow parameters
0s
Test STAR RSEM with workflow parameters
0s
Test STAR Salmon with workflow parameters
0s
BAM_MARKDUPLICATES_PICARD docker NF-23.04.0
1m 27s
SAMTOOLS_FLAGSTAT docker NF-23.04.0
41s
RSEQC_TIN docker NF-23.04.0
54s
HISAT2_BUILD docker NF-23.04.0
38s
RSEQC_JUNCTIONANNOTATION docker NF-23.04.0
48s
FASTQC docker NF-23.04.0
3m 31s
KALLISTO_INDEX docker NF-23.04.0
35s
PRESEQ_LCEXTRAP docker NF-23.04.0
43s
GUNZIP docker NF-23.04.0
32s
RSEM_PREPAREREFERENCE docker NF-23.04.0
56s
MULTIQC docker NF-23.04.0
1m 35s
FASTQ_FASTQC_UMITOOLS_TRIMGALORE docker NF-23.04.0
1m 52s
BBMAP_BBSPLIT docker NF-23.04.0
52s
UCSC_BEDGRAPHTOBIGWIG docker NF-23.04.0
36s
FASTP docker NF-23.04.0
2m 28s
QUALIMAP_RNASEQ docker NF-23.04.0
1m 3s
FASTQ_FASTQC_UMITOOLS_FASTP docker NF-23.04.0
56s
RSEQC_INFEREXPERIMENT docker NF-23.04.0
58s
RSEQC_READDUPLICATION docker NF-23.04.0
48s
PICARD_MARKDUPLICATES docker NF-23.04.0
1m 20s
SORTMERNA docker NF-23.04.0
1m 56s
SAMTOOLS_INDEX docker NF-23.04.0
1m 2s
CUSTOM_TX2GENE docker NF-23.04.0
1m 3s
KALLISTO_QUANT docker NF-23.04.0
50s
UMITOOLS_PREPAREFORRSEM docker NF-23.04.0
54s
CUSTOM_CATADDITIONALFASTA docker NF-23.04.0
43s
PIPELINE docker NF-23.04.0
11m 29s
UTILS_NFCORE_PIPELINE docker NF-23.04.0
1m 42s
UNTAR docker NF-23.04.0
4m 36s
TXIMETA_TXIMPORT docker NF-23.04.0
1m 49s
SAMTOOLS_IDXSTATS docker NF-23.04.0
1m 13s
STRINGTIE_STRINGTIE docker NF-23.04.0
1m 14s
FQ_SUBSAMPLE docker NF-23.04.0
1m 20s
BEDGRAPH_BEDCLIP_BEDGRAPHTOBIGWIG docker NF-23.04.0
37s
RSEM_CALCULATEEXPRESSION docker NF-23.04.0
2m 3s
SUMMARIZEDEXPERIMENT_SUMMARIZEDEXPERIMENT docker NF-23.04.0
3m 43s
BAM_DEDUP_STATS_SAMTOOLS_UMITOOLS docker NF-23.04.0
53s
GFFREAD docker NF-23.04.0
56s
HISAT2_ALIGN docker NF-23.04.0
1m 49s
RSEQC_JUNCTIONSATURATION docker NF-23.04.0
47s
UMITOOLS_DEDUP docker NF-23.04.0
1m 32s
CAT_FASTQ docker NF-23.04.0
1m 11s
RSEQC_BAMSTAT docker NF-23.04.0
52s
SUBREAD_FEATURECOUNTS docker NF-23.04.0
53s
TRIMGALORE docker NF-23.04.0
1m 58s
FASTQ_ALIGN_HISAT2 docker NF-23.04.0
1m 10s
BAM_SORT_STATS_SAMTOOLS docker NF-23.04.0
1m 1s
STAR_ALIGN docker NF-23.04.0
8m 36s
RSEQC_READDISTRIBUTION docker NF-23.04.0
51s
SALMON_INDEX docker NF-23.04.0
48s
HISAT2_EXTRACTSPLICESITES docker NF-23.04.0
49s
BAM_STATS_SAMTOOLS docker NF-23.04.0
2m 35s
UCSC_BEDCLIP docker NF-23.04.0
40s
SAMTOOLS_STATS docker NF-23.04.0
1m 11s
STAR_GENOMEGENERATE docker NF-23.04.0
1m 9s
BAM_RSEQC docker NF-23.04.0
1m 3s
CUSTOM_GETCHROMSIZES docker NF-23.04.0
49s
RSEQC_INNERDISTANCE docker NF-23.04.0
49s
SALMON_QUANT docker NF-23.04.0
1m 16s
SAMTOOLS_SORT docker NF-23.04.0
51s
UTILS_NEXTFLOW_PIPELINE docker NF-23.04.0
1m 8s
UTILS_NFVALIDATION_PLUGIN docker NF-23.04.0
1m 3s
UMITOOLS_EXTRACT docker NF-23.04.0
2m 9s
FASTQ_SUBSAMPLE_FQ_SALMON docker NF-23.04.0
53s
confirm-pass
1s
1h 39m 16s