Merge branch 'dev' into update_animate_map

maxulysse · Sep 20, 2024 · 9bc5d85 · 9bc5d85
2 parents 577c3ab + fadc4ea
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,8 +7,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Enhancements & fixes
 
-- [PR #1388](https://github.com/nf-core/rnaseq/pull/1351) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
-- [PR #1186](https://github.com/nf-core/rnaseq/pull/1186) - Bump pipeline version to 3.16.0dev
+- [PR #1376](https://github.com/nf-core/rnaseq/pull/1376) - Fix invalid named parameter syntax
+- [PR #1386](https://github.com/nf-core/rnaseq/pull/1386) - Bump pipeline version to 3.16.0dev
+- [PR #1388](https://github.com/nf-core/rnaseq/pull/1388) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
 - [PR #1389](https://github.com/nf-core/rnaseq/pull/1389) - Update animated subway map
 
 ### Parameters

diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf
@@ -597,7 +597,7 @@ workflow RNASEQ {
             ch_strand_comparison = BAM_RSEQC.out.inferexperiment_txt
                 .map {
                     meta, strand_log ->
-                        def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, stranded_threshold = params.stranded_threshold, unstranded_threshold = params.unstranded_threshold)
+                        def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, params.stranded_threshold, params.unstranded_threshold)
                         rseqc_strandedness = rseqc_inferred_strand.inferred_strandedness
 
                         def status = 'fail'