Merge pull request nf-core#1247 from maxulysse/nf-test_prepare_genome

nf-test prepare_genome
maxulysse · Mar 8, 2024 · cd6d5ac · cd6d5ac
2 parents 45239cc + 8551a0d
commit cd6d5ac
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Showing 13 changed files with 489 additions and 36 deletions.
diff --git a/modules.json b/modules.json
@@ -191,7 +191,7 @@
                     },
                     "samtools/sort": {
                         "branch": "master",
-                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
+                        "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                         "installed_by": ["bam_sort_stats_samtools"]
                     },
                     "samtools/stats": {
@@ -290,7 +290,7 @@
                     },
                     "bam_sort_stats_samtools": {
                         "branch": "master",
-                        "git_sha": "f4596fe0bdc096cf53ec4497e83defdb3a94ff62",
+                        "git_sha": "4352dbdb09ec40db71e9b172b97a01dcf5622c26",
                         "installed_by": ["fastq_align_hisat2"]
                     },
                     "bam_stats_samtools": {

diff --git a/modules/nf-core/samtools/sort/main.nf b/modules/nf-core/samtools/sort/main.nf
diff --git a/modules/nf-core/samtools/sort/meta.yml b/modules/nf-core/samtools/sort/meta.yml
diff --git a/modules/nf-core/samtools/sort/tests/main.nf.test b/modules/nf-core/samtools/sort/tests/main.nf.test
diff --git a/modules/nf-core/samtools/sort/tests/main.nf.test.snap b/modules/nf-core/samtools/sort/tests/main.nf.test.snap
diff --git a/modules/nf-core/samtools/sort/tests/nextflow.config b/modules/nf-core/samtools/sort/tests/nextflow.config