Merge pull request #235 from mcwdsi/issue-229

replaced all usages of 'obsolete is owned by', fixes #229
mcwdsi · May 8, 2024 · 43b7206 · 43b7206
2 parents dc65631 + 30c1042
commit 43b7206
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Showing 4 changed files with 28 additions and 8 deletions.
diff --git a/src/ontology/imports/external_import.owl b/src/ontology/imports/external_import.owl
@@ -60,6 +60,8 @@ Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000139>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000181>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/IAO_0000136>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/IAO_0000219>))
+Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBIB_0000732>))
+Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBIB_0000735>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBI_0000299>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBI_0000312>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBI_0000846>))

diff --git a/src/ontology/imports/obib_import.owl b/src/ontology/imports/obib_import.owl
@@ -7,10 +7,10 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/omrse/imports/obib_import.owl>
-<http://purl.obolibrary.org/obo/omrse/releases/2023-11-01/imports/obib_import.owl>
+<http://purl.obolibrary.org/obo/omrse/releases/2024-05-08/imports/obib_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/obib/2023-04-05/obib.owl>)
 Annotation(<http://purl.org/dc/elements/1.1/source> "MIABIS_v2_accepted and UPenn Biobank ontology"@en)
-Annotation(owl:versionInfo "2023-11-01")
+Annotation(owl:versionInfo "2024-05-08")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000016>))
@@ -42,6 +42,8 @@ Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000054>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000055>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000066>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/BFO_0000067>))
+Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBIB_0000732>))
+Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OBIB_0000735>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OMIABIS_0000008>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OMIABIS_0000009>))
 Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/OMIABIS_0000048>))
@@ -133,6 +135,19 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.ob
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/BFO_0000067> "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000067> "contains process"@en)
 
+# Object Property: <http://purl.obolibrary.org/obo/OBIB_0000732> (owns)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/OBIB_0000732> "Mathias Brochhausen")
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000600> <http://purl.obolibrary.org/obo/OBIB_0000732> "This is a primitive relation. This relation is the foundation to the owners right to have the owned entity at his/her full disposal."@en)
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBIB_0000732> "owns"@en)
+SubObjectPropertyOf(<http://purl.obolibrary.org/obo/OBIB_0000732> owl:topObjectProperty)
+
+# Object Property: <http://purl.obolibrary.org/obo/OBIB_0000735> (is owned by)
+
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBIB_0000735> "a is owned by b if b has complete power over a. All rights and obligations of ownership are grounded in this (primitive) relation. The claims and obligations of ownership can be partially transferred to a third party by the owner, b."@en)
+AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000119> <http://purl.obolibrary.org/obo/OBIB_0000735> "Reinach, A. Sämtliche Werke. Texkritische Ausgabe, München: Philosophia Verlag, 1989, p.189-204.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBIB_0000735> "is owned by"@en)
+
 # Object Property: <http://purl.obolibrary.org/obo/OMIABIS_0000008> (obsolete owns)
 
 AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/OMIABIS_0000008> "Mathias Brochhausen")

diff --git a/src/ontology/omrse-edit.owl b/src/ontology/omrse-edit.owl
@@ -13,6 +13,7 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/omrse.owl>
+Import(<http://purl.obolibrary.org/obo/omrse/external_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/bfo_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/d-acts_import.owl>)
@@ -27,8 +28,8 @@ Import(<http://purl.obolibrary.org/obo/omrse/imports/oostt_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/pco_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/pno_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/imports/ro_import.owl>)
-Import(<http://purl.obolibrary.org/obo/omrse/releases/2023-09-08/imports/mf_import.owl>)
 Import(<http://purl.obolibrary.org/obo/omrse/language-individuals/>)
+Import(<http://purl.obolibrary.org/obo/omrse/releases/2023-09-08/imports/mf_import.owl>)
 Annotation(dc:contributor "Barry Smith"@en)
 Annotation(dc:contributor "Chris Stoeckert"@en)
 Annotation(dc:contributor "Daniel Welch"@en)
@@ -1188,7 +1189,7 @@ AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000063 "A health care facility t
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000063 "Mathias Brochhausen"@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000063 "William Hogan"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000063 "hospital facility"@en)
-EquivalentClasses(obo:OMRSE_00000063 ObjectIntersectionOf(ObjectUnionOf(ObjectSomeValuesFrom(obo:OMIABIS_0000048 obo:OMRSE_00000056) ObjectSomeValuesFrom(obo:OMRSE_00000068 obo:OMRSE_00000056)) ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000052)))
+EquivalentClasses(obo:OMRSE_00000063 ObjectIntersectionOf(ObjectUnionOf(ObjectSomeValuesFrom(obo:OBIB_0000735 obo:OMRSE_00000056) ObjectSomeValuesFrom(obo:OMRSE_00000068 obo:OMRSE_00000056)) ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000052)))
 SubClassOf(obo:OMRSE_00000063 obo:OMRSE_00000102)
 SubClassOf(obo:OMRSE_00000063 ObjectSomeValuesFrom(obo:BFO_0000067 obo:OMRSE_00000160))
 
@@ -1197,7 +1198,7 @@ SubClassOf(obo:OMRSE_00000063 ObjectSomeValuesFrom(obo:BFO_0000067 obo:OMRSE_000
 AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000064 "A facility that is run by a school organization and is the bearer of a school function."@en)
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000064 "Mathias Brochhausen"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000064 "school facility"@en)
-EquivalentClasses(obo:OMRSE_00000064 ObjectIntersectionOf(obo:OMRSE_00000062 ObjectUnionOf(ObjectSomeValuesFrom(obo:OMIABIS_0000048 obo:OMRSE_00000057) ObjectSomeValuesFrom(obo:OMRSE_00000068 obo:OMRSE_00000057)) ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000053)))
+EquivalentClasses(obo:OMRSE_00000064 ObjectIntersectionOf(obo:OMRSE_00000062 ObjectUnionOf(ObjectSomeValuesFrom(obo:OBIB_0000735 obo:OMRSE_00000057) ObjectSomeValuesFrom(obo:OMRSE_00000068 obo:OMRSE_00000057)) ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000053)))
 SubClassOf(obo:OMRSE_00000064 obo:OMRSE_00000062)
 
 # Class: obo:OMRSE_00000065 (secondary school role)
@@ -1472,7 +1473,7 @@ AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000102 "A facility bearing the f
 AnnotationAssertion(obo:IAO_0000117 obo:OMRSE_00000102 "William Hogan"@en)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000102 "health care facility"@en)
 SubClassOf(obo:OMRSE_00000102 obo:OMRSE_00000062)
-SubClassOf(obo:OMRSE_00000102 ObjectUnionOf(ObjectIntersectionOf(obo:OMRSE_00000062 ObjectSomeValuesFrom(obo:OMIABIS_0000048 ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000015))) ObjectSomeValuesFrom(obo:OMRSE_00000068 ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000015))))
+SubClassOf(obo:OMRSE_00000102 ObjectUnionOf(ObjectIntersectionOf(obo:OMRSE_00000062 ObjectSomeValuesFrom(obo:OBIB_0000735 ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000015))) ObjectSomeValuesFrom(obo:OMRSE_00000068 ObjectSomeValuesFrom(obo:RO_0000053 obo:OMRSE_00000015))))
 
 # Class: obo:OMRSE_00000103 (US Census unemployed role)
 
@@ -3007,7 +3008,7 @@ SubClassOf(obo:OMRSE_00000505 obo:OMRSE_00000506)
 AnnotationAssertion(rdfs:label obo:OMRSE_00000506 "socio-economic data item"@en)
 SubClassOf(obo:OMRSE_00000506 obo:IAO_0000027)
 
-# Class: obo:OMRSE_00000507 (obsolete non-binary gender identity datum)
+# Class: obo:OMRSE_00000507 (Afar)
 
 AnnotationAssertion(obo:IAO_0000111 obo:OMRSE_00000507 "non-binary gender identity datum"@en)
 AnnotationAssertion(obo:IAO_0000115 obo:OMRSE_00000507 "A gender identity datum resulting from a gender identification process in which ‘non binary’ is selected based on the participant's subjective sense of gender."@en)
@@ -3537,4 +3538,4 @@ AnnotationAssertion(rdfs:label obo:IAO_0000412 "imported from"@en)
 AnnotationAssertion(owl:deprecated obo:OMIABIS_0000060 "true"^^xsd:boolean)
 AnnotationAssertion(owl:deprecated obo:OMIABIS_0001025 "true"^^xsd:boolean)
 AnnotationAssertion(owl:deprecated obo:OMIABIS_0001035 "true"^^xsd:boolean)
-)
+)
diff --git a/src/templates/external_import.tsv b/src/templates/external_import.tsv
@@ -64,6 +64,8 @@ OGMS:0000102	owl:Class
 OBIB:0000710	owl:Class
 OBIB:0000667	owl:Class
 OBIB:0000701	owl:Class
+OBIB:0000732	owl:ObjectProperty
+OBIB:0000735	owl:ObjectProperty
 OOSTT:00000030	owl:AnnotationProperty
 OOSTT:00000081	owl:Class
 OOSTT:00000082	owl:Class