Skip to content

Commit

Permalink
Merge pull request #220 from mcwdsi/fix-survey-class-issues
Browse files Browse the repository at this point in the history
fixes OMIABIS to OBIB transition for survey classes, and county surve…
  • Loading branch information
dillerm authored Nov 2, 2023
2 parents 192feb6 + a64e15c commit cc73a62
Show file tree
Hide file tree
Showing 18 changed files with 15,739 additions and 26,241 deletions.
163 changes: 60 additions & 103 deletions src/ontology/imports/apollo_sv_import.owl
Original file line number Diff line number Diff line change
@@ -1,103 +1,60 @@
<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl#"
xml:base="http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/omrse/releases/2023-05-02/imports/apollo_sv_import.owl"/>
<dc:source rdf:resource="http://purl.obolibrary.org/obo/apollo_sv/releases/v2023-01-10/apollo_sv.owl"/>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-05-02</owl:versionInfo>
</owl:Ontology>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>



<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600"/>



<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Classes
//
///////////////////////////////////////////////////////////////////////////////////////
-->




<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000032 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000032">
<obo:IAO_0000115 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000115>
<obo:IAO_0000117>Mathias Brochhausen</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A measurement datum that is the output of counting.</obo:IAO_0000600>
<rdfs:label xml:lang="en">count</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000480 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000480">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0007610"/>
<obo:IAO_0000115 xml:lang="en">A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<obo:IAO_0000600 xml:lang="en">A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification.</obo:IAO_0000600>
<rdfs:label xml:lang="en">geographical migration of organism</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/APOLLO_SV_00000532 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/APOLLO_SV_00000532">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/APOLLO_SV_00000480"/>
<obo:IAO_0000115 xml:lang="en">A geographical migration of an organism belonging to the species Homo sapiens.</obo:IAO_0000115>
<obo:IAO_0000117>Matthew Diller</obo:IAO_0000117>
<obo:IAO_0000117>William R. Hogan</obo:IAO_0000117>
<rdfs:label xml:lang="en">human travel</rdfs:label>
</owl:Class>



<!-- http://purl.obolibrary.org/obo/GO_0007610 -->

<owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0007610"/>
</rdf:RDF>



<!-- Generated by the OWL API (version 4.5.6) https://github.com/owlcs/owlapi -->

Prefix(:=<http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl#>)
Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/omrse/imports/apollo_sv_import.owl>
<http://purl.obolibrary.org/obo/omrse/releases/2023-11-01/imports/apollo_sv_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/apollo_sv/releases/2023-06-02/apollo_sv.owl>)
Annotation(owl:versionInfo "2023-11-01")

Declaration(Class(<http://purl.obolibrary.org/obo/APOLLO_SV_00000032>))
Declaration(Class(<http://purl.obolibrary.org/obo/APOLLO_SV_00000480>))
Declaration(Class(<http://purl.obolibrary.org/obo/APOLLO_SV_00000532>))
Declaration(Class(<http://purl.obolibrary.org/obo/GO_0007610>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000117>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000600>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/contributor>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/creator>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/source>))
Declaration(AnnotationProperty(<http://purl.org/dc/elements/1.1/title>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/description>))
Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
Declaration(AnnotationProperty(<http://www.referent-tracking.com/RTS_00000001>))
Declaration(AnnotationProperty(<http://www.referent-tracking.com/RTS_00000002>))


############################
# Classes
############################

# Class: <http://purl.obolibrary.org/obo/APOLLO_SV_00000032> (count)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/APOLLO_SV_00000032> "A measurement datum that is the output of counting."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/APOLLO_SV_00000032> "Mathias Brochhausen")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000600> <http://purl.obolibrary.org/obo/APOLLO_SV_00000032> "A measurement datum that is the output of counting."@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/APOLLO_SV_00000032> "count"@en)

# Class: <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> (geographical migration of organism)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> "A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> "Matthew Diller")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> "William R. Hogan")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000600> <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> "A behavior of one or more organisms that is characterized by the displacement from one geographic region to some target geographic region, and is the realization of either a biological function or (a concretization of) an objective specification."@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/APOLLO_SV_00000480> "geographical migration of organism"@en)
SubClassOf(<http://purl.obolibrary.org/obo/APOLLO_SV_00000480> <http://purl.obolibrary.org/obo/GO_0007610>)

# Class: <http://purl.obolibrary.org/obo/APOLLO_SV_00000532> (human travel)

AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/APOLLO_SV_00000532> "A geographical migration of an organism belonging to the species Homo sapiens."@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/APOLLO_SV_00000532> "Matthew Diller")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000117> <http://purl.obolibrary.org/obo/APOLLO_SV_00000532> "William R. Hogan")
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/APOLLO_SV_00000532> "human travel"@en)
SubClassOf(<http://purl.obolibrary.org/obo/APOLLO_SV_00000532> <http://purl.obolibrary.org/obo/APOLLO_SV_00000480>)


)
Loading

0 comments on commit cc73a62

Please sign in to comment.