Merge pull request #212 from medizininformatik-initiative/release/v4.0.0

Release 4.0.0
medizininformatik-initiative · Oct 6, 2023 · 06d6319 · 06d6319
2 parents f2f0e26 + 832194e
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diff --git a/.github/integration-test/docker-compose.yml b/.github/integration-test/docker-compose.yml
@@ -0,0 +1,137 @@
+version: '3.7'
+services:
+  feasibility-gui-backend:
+    container_name: feasibility-gui-backend
+    image: backend:latest
+    ports:
+      - "8091:8090"
+    depends_on:
+      - feasibility-gui-backend-db
+    environment:
+      QUERYRESULT_PUBLIC_KEY: "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"
+      # ----- app
+      QUERY_VALIDATION_ENABLED: "true"
+      CQL_TRANSLATE_ENABLED: "false"
+      FHIR_TRANSLATE_ENABLED: "false"
+      API_BASE_URL: "http://localhost:8091/api/"
+      ALLOWED_ORIGINS: "https://localhost"
+      QUERYRESULT_EXPIRY_MINUTES: 5
+      # ---- db config
+      FEASIBILITY_DATABASE_HOST: "feasibility-gui-backend-db"
+      FEASIBILITY_DATABASE_PORT: 5432
+      FEASIBILITY_DATABASE_USER: "guidbuser"
+      FEASIBILITY_DATABASE_PASSWORD: "guidbpw"
+      # ---- auth
+      KEYCLOAK_ENABLED: "true"
+      KEYCLOAK_ALLOWED_ROLE: "FeasibilityUser"
+      KEYCLOAK_POWER_ROLE: "FeasibilityPowerUser"
+      KEYCLOAK_ADMIN_ROLE: "FeasibilityAdmin"
+      KEYCLOAK_BASE_URL_ISSUER: "http://auth:8080/auth"
+      KEYCLOAK_BASE_URL_JWK: "http://auth:8080/auth"
+      KEYCLOAK_REALM: "feasibility"
+      #---- Direct broker
+      BROKER_CLIENT_DIRECT_ENABLED: "true"
+      BROKER_CLIENT_DIRECT_USE_CQL: "false"
+      BROKER_CLIENT_OBFUSCATE_RESULT_COUNT: "false"
+      FLARE_WEBSERVICE_BASE_URL: "http://flare:8080"
+      CQL_SERVER_BASE_URL: "http://blaze:8080/fhir"
+      # ---- Aktin broker
+      BROKER_CLIENT_AKTIN_ENABLED: "false"
+      AKTIN_BROKER_BASE_URL: "http://aktin-broker:8080/broker/"
+      AKTIN_BROKER_API_KEY: "xxxApiKeyAdmin123"
+      # ---- DSF  broker
+      BROKER_CLIENT_DSF_ENABLED: "false"
+      DSF_SECURITY_CACERT: "/opt/codex-feasibility-security/ca.pem"
+      DSF_SECURITY_KEYSTORE_P12FILE: "/opt/codex-feasibility-security/test-user.p12"
+      DSF_SECURITY_KEYSTORE_PASSWORD: "password"
+      DSF_WEBSERVICE_BASE_URL: "https://dsf-zars-fhir-proxy/fhir"
+      DSF_WEBSOCKET_URL: "wss://dsf-zars-fhir-proxy:443/fhir/ws"
+      DSF_ORGANIZATION_ID: "Test_ZARS"
+      # ---- privacy
+      PRIVACY_QUOTA_SOFT_CREATE_AMOUNT: 3
+      PRIVACY_QUOTA_SOFT_CREATE_INTERVALMINUTES: 1
+      PRIVACY_QUOTA_HARD_CREATE_AMOUNT: 50
+      PRIVACY_QUOTA_HARD_CREATE_INTERVALMINUTES: 10080
+      PRIVACY_QUOTA_READ_SUMMARY_POLLINGINTERVALSECONDS: 10
+      PRIVACY_QUOTA_READ_DETAILED_OBFUSCATED_POLLINGINTERVALSECONDS: 10
+      PRIVACY_QUOTA_READ_DETAILED_OBFUSCATED_AMOUNT: 3
+      PRIVACY_QUOTA_READ_DETAILED_OBFUSCATED_INTERVALSECONDS: 7200
+      PRIVACY_THRESHOLD_RESULTS: 0
+      PRIVACY_THRESHOLD_SITES: 0
+      # ---- logging
+      LOG_LEVEL_SQL: "warn"
+      LOG_LEVEL: "warn"
+    restart: unless-stopped
+    volumes:
+      - ./ontology/ui_profiles:/opt/codex-feasibility-backend/ontology/ui_profiles
+      - ./ontology/codex-code-tree.json:/opt/codex-feasibility-backend/ontology/codex-code-tree.json
+      - ./ontology/codex-term-code-mapping.json:/opt/codex-feasibility-backend/ontology/codex-term-code-mapping.json
+      - ./ontology/migration/R__Load_latest_ui_profile.sql:/opt/codex-feasibility-backend/ontology/migration/R__Load_latest_ui_profile.sql
+      - ./secrets:/opt/codex-feasibility-security
+  feasibility-gui-backend-db:
+    image: 'postgres:15-alpine'
+    container_name: feasibility-gui-backend-db
+    ports:
+      - "5432:5432"
+    environment:
+      POSTGRES_USER: "guidbuser"
+      POSTGRES_PASSWORD: "guidbpw"
+      POSTGRES_DB: "codex_ui"
+
+  blaze:
+    image: "samply/blaze:0.22"
+    environment:
+      BASE_URL: "http://blaze:8080"
+      JAVA_TOOL_OPTIONS: "-Xmx1g"
+      LOG_LEVEL: "debug"
+    ports:
+      - "8082:8080"
+    volumes:
+      - "blaze-data:/app/data"
+
+  flare:
+    image: ghcr.io/medizininformatik-initiative/flare:2.0.0-rc2
+    ports:
+      - "8092:8080"
+    environment:
+      FLARE_FHIR_SERVER: "http://blaze:8080/fhir"
+      JAVA_TOOL_OPTIONS: "-Xmx1g"
+      LOG_LEVEL: "debug"
+    restart: unless-stopped
+
+  auth-db:
+    image: postgres:15-alpine
+    restart: unless-stopped
+    environment:
+      POSTGRES_DB: "keycloakdb"
+      POSTGRES_USER: "keycloakdbuser"
+      POSTGRES_PASSWORD: "keycloakdbpw"
+    volumes:
+      - "feasibility-auth-db:/var/lib/postgresql/data"
+
+  auth:
+    image: keycloak/keycloak:21.1
+    command: ["start", "--import-realm"]
+    restart: unless-stopped
+    environment:
+      KC_DB: "postgres"
+      KC_DB_URL: "jdbc:postgresql://auth-db:5432/${FEASIBILITY_KC_DB:-keycloakdb}"
+      KC_DB_USERNAME: "keycloakdbuser"
+      KC_DB_PASSWORD: "keycloakdbpw"
+      KEYCLOAK_ADMIN: "keycloakadmin"
+      KEYCLOAK_ADMIN_PASSWORD: "keycloak"
+      KC_HTTP_RELATIVE_PATH: "/auth"
+      KC_HOSTNAME_URL: "http://auth:8080/auth"
+      KC_HOSTNAME_ADMIN_URL: "http://auth:8080/auth/keycloakadmin"
+      KC_LOG_LEVEL: "info"
+      KC_PROXY: "edge"
+    ports:
+      - "8083:8080"
+    volumes:
+      - ./keycloak-init/feasibility-realm.json:/opt/keycloak/data/import/realm.json:ro
+    depends_on:
+      - auth-db
+
+volumes:
+  feasibility-auth-db:
+  blaze-data: