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Merge pull request #208 from medizininformatik-initiative/feature/206…
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…-disable-hibernate-sql-logging

#206 - Disable hibernate sql logging
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@juliangruendner
juliangruendner authored Sep 27, 2023
2 parents 35c6aae + 8fe6c25 commit 5044967
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65 changes: 33 additions & 32 deletions README.md
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## Configuration Base

| EnvVar | Description | Example | Default |
|------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------|--------------------------------------------------|
| LOG_LEVEL | Sets the log level being used. Possible values are: `error`, `warn`, `info`, `debug` and `trace`. | | `warn` |
| BROKER_CLIENT_MOCK_ENABLED | Enables the mock client. Possible values are `true` and `false`. | | `true` |
| BROKER_CLIENT_DIRECT_ENABLED | Enables the direct client. Possible values are `true` and `false`. | | `false` |
| BROKER_CLIENT_AKTIN_ENABLED | Enables the aktin client. Possible values are `true` and `false`. | | `false` |
| BROKER_CLIENT_DSF_ENABLED | Enables the dsf client. Possible values are `true` and `false`. | | `false` |
| KEYCLOAK_BASE_URL | Base URL of the keycloak instance. | | `http://localhost:8080` |
| KEYCLOAK_BASE_URL_ISSUER | Base URL the keycloak instance uses in the issuer claim | | `http://localhost:8080` |
| KEYCLOAK_BASE_URL_JWK | Base URL for the JWK Set URI of the keycloak instance | | `http://localhost:8080` |
| KEYCLOAK_REALM | Realm to be used for checking bearer tokens. | | `feasibility` |
| KEYCLOAK_CLIENT_ID | Client ID to be used for checking bearer tokens. | | `feasibility-webapp` |
| KEYCLOAK_ALLOWED_ROLE | Role that has to be part of the bearer token in order for the requester to be authorized. | | `FeasibilityUser` |
| KEYCLOAK_POWER_ROLE | Optional role that can be assigned to a user to free them from being subject to any hard limits (see _PRIVACY_QUOTA_HARD.*_ EnvVars). | | `FeasibilityPowerUser` |
| KEYCLOAK_ADMIN_ROLE | Role that gives admin rights to a user. Admins do not fall under any limits and can also see un-obfuscated site names. | | `FeasibilityAdmin` |
| SPRING_DATASOURCE_URL | The JDBC URL of the Postgres feasibility database. | | `jdbc:postgresql://feasibility-db:5432/codex_ui` |
| SPRING_DATASOURCE_USERNAME | Username to connect to the Postgres feasibility database. | | `guidbuser` |
| SPRING_DATASOURCE_PASSWORD | Password to connect to the Postgres feasibility database. | | `guidbpw` |
| ONTOLOGY_FILES_FOLDER_UI | | | ontology/ui_profiles |
| ONTOLOGY_DB_MIGRATION_FOLDER | | | ontology/migration |
| MAPPINGS_FILE | | | ontology/termCodeMapping.json |
| CONCEPT_TREE_FILE | | | ontology/conceptTree.json |
| CQL_TRANSLATE_ENABLED | | | true |
| FHIR_TRANSLATE_ENABLED | | | false |
| FLARE_WEBSERVICE_BASE_URL | URL of the local FLARE webservice - needed for FHIR query translation and when running the DIRECT path | | http://localhost:5000 |
| CQL_SERVER_BASE_URL | URL of the local FHIR server that handles CQL requests | | http://cql |
| API_BASE_URL | Sets the base URL of the webservice. This is necessary if the webservice is running behind a proxy server. If not filled, the API base URL is the request URL | https://host/api | |
| QUERY_VALIDATION_ENABLED | When enabled, any structured query submitted via the `run-query` endpoint is validated against the JSON schema located in `src/main/resources/query/query-schema.json` | true / false | true |
| QUERYRESULT_EXPIRY_MINUTES | How many minutes should query results be kept in memory? | | 5 |
| QUERYRESULT_PUBLIC_KEY | The public key in Base64-encoded DER format without banners and line breaks. Mandatory if _QUERYRESULT_DISABLE_LOG_FILE_ENCRYPTION_ is _false_ |
| QUERYRESULT_DISABLE_LOG_FILE_ENCRYPTION | Disable encryption of the result log file. | true / false | |
| ALLOWED_ORIGINS | Allowed origins for cross-origin requests. This should at least cover the frontend address. | | http://localhost |
| EnvVar | Description | Example | Default |
|-----------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------|--------------------------------------------------|
| LOG_LEVEL | Sets the log level being used. Possible values are: `error`, `warn`, `info`, `debug` and `trace`. | | `warn` |
| HIBERNATE_SHOW_SQL | Show the sql statements hibernate executes | | `false` |
| BROKER_CLIENT_MOCK_ENABLED | Enables the mock client. Possible values are `true` and `false`. | | `true` |
| BROKER_CLIENT_DIRECT_ENABLED | Enables the direct client. Possible values are `true` and `false`. | | `false` |
| BROKER_CLIENT_AKTIN_ENABLED | Enables the aktin client. Possible values are `true` and `false`. | | `false` |
| BROKER_CLIENT_DSF_ENABLED | Enables the dsf client. Possible values are `true` and `false`. | | `false` |
| KEYCLOAK_BASE_URL | Base URL of the keycloak instance. | | `http://localhost:8080` |
| KEYCLOAK_BASE_URL_ISSUER | Base URL the keycloak instance uses in the issuer claim | | `http://localhost:8080` |
| KEYCLOAK_BASE_URL_JWK | Base URL for the JWK Set URI of the keycloak instance | | `http://localhost:8080` |
| KEYCLOAK_REALM | Realm to be used for checking bearer tokens. | | `feasibility` |
| KEYCLOAK_CLIENT_ID | Client ID to be used for checking bearer tokens. | | `feasibility-webapp` |
| KEYCLOAK_ALLOWED_ROLE | Role that has to be part of the bearer token in order for the requester to be authorized. | | `FeasibilityUser` |
| KEYCLOAK_POWER_ROLE | Optional role that can be assigned to a user to free them from being subject to any hard limits (see _PRIVACY_QUOTA_HARD.*_ EnvVars). | | `FeasibilityPowerUser` |
| KEYCLOAK_ADMIN_ROLE | Role that gives admin rights to a user. Admins do not fall under any limits and can also see un-obfuscated site names. | | `FeasibilityAdmin` |
| SPRING_DATASOURCE_URL | The JDBC URL of the Postgres feasibility database. | | `jdbc:postgresql://feasibility-db:5432/codex_ui` |
| SPRING_DATASOURCE_USERNAME | Username to connect to the Postgres feasibility database. | | `guidbuser` |
| SPRING_DATASOURCE_PASSWORD | Password to connect to the Postgres feasibility database. | | `guidbpw` |
| ONTOLOGY_FILES_FOLDER_UI | | | ontology/ui_profiles |
| ONTOLOGY_DB_MIGRATION_FOLDER | | | ontology/migration |
| MAPPINGS_FILE | | | ontology/termCodeMapping.json |
| CONCEPT_TREE_FILE | | | ontology/conceptTree.json |
| CQL_TRANSLATE_ENABLED | | | true |
| FHIR_TRANSLATE_ENABLED | | | false |
| FLARE_WEBSERVICE_BASE_URL | URL of the local FLARE webservice - needed for FHIR query translation and when running the DIRECT path | | http://localhost:5000 |
| CQL_SERVER_BASE_URL | URL of the local FHIR server that handles CQL requests | | http://cql |
| API_BASE_URL | Sets the base URL of the webservice. This is necessary if the webservice is running behind a proxy server. If not filled, the API base URL is the request URL | https://host/api | |
| QUERY_VALIDATION_ENABLED | When enabled, any structured query submitted via the `run-query` endpoint is validated against the JSON schema located in `src/main/resources/query/query-schema.json` | true / false | true |
| QUERYRESULT_EXPIRY_MINUTES | How many minutes should query results be kept in memory? | | 5 |
| QUERYRESULT_PUBLIC_KEY | The public key in Base64-encoded DER format without banners and line breaks. Mandatory if _QUERYRESULT_DISABLE_LOG_FILE_ENCRYPTION_ is _false_ |
| QUERYRESULT_DISABLE_LOG_FILE_ENCRYPTION | Disable encryption of the result log file. | true / false | |
| ALLOWED_ORIGINS | Allowed origins for cross-origin requests. This should at least cover the frontend address. | | http://localhost |


### Running the DIRECT Path
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1 change: 1 addition & 0 deletions src/main/resources/application.yml
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Expand Up @@ -16,6 +16,7 @@ spring:
properties:
hibernate:
dialect: org.hibernate.dialect.PostgreSQLDialect
show_sql: ${HIBERNATE_SHOW_SQL:false}
flyway:
locations: filesystem:${ONTOLOGY_DB_MIGRATION_FOLDER:ontology/migration},classpath:db/migration
security:
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