Merge pull request #44 from medizininformatik-initiative/send-measure… #208
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| name: Build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| tags: | |
| - '*.*.*' | |
| pull_request: | |
| branches: | |
| - main | |
| - develop | |
| jobs: | |
| fhir-data-evaluator-ig: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Setup Node | |
| uses: actions/setup-node@v4 | |
| with: | |
| node-version: 21 | |
| - name: Install SUSHI | |
| run: npm install -g fsh-sushi | |
| - name: Check out Git repository | |
| uses: actions/checkout@v4 | |
| - name: Build | |
| working-directory: shorthand/FhirDataEvaluatorIG | |
| run: make build | |
| - name: Validate Generated Measures | |
| working-directory: shorthand/FhirDataEvaluatorIG | |
| run: make validate | |
| - name: Validate Documentation Measures | |
| run: make validate -C shorthand/FhirDataEvaluatorIG RESOURCES_PATH="${GITHUB_WORKSPACE}/Documentation/example-measures/example-measure-*.json" | |
| - name: Upload Generated Measures for Integration Test | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: generated-resources | |
| path: shorthand/FhirDataEvaluatorIG/fsh-generated/resources/Measure-IntegrationTest-Measure-*.json | |
| build: | |
| needs: fhir-data-evaluator-ig | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Download Generated Resources | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: generated-resources | |
| path: shorthand/FhirDataEvaluatorIG/fsh-generated/resources | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: 17 | |
| - name: Build | |
| run: mvn -B verify | |
| - name: Upload Jar | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: fhir-data-evaluator-jar | |
| path: target/fhir-data-evaluator.jar | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Build and Export to Docker | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: docker/Dockerfile | |
| tags: fhir-data-evaluator:latest | |
| outputs: type=docker,dest=/tmp/fhir-data-evaluator.tar | |
| - name: Upload FhirDataEvaluator Image | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: fhir-data-evaluator-image | |
| path: /tmp/fhir-data-evaluator.tar | |
| integration-test: | |
| needs: build | |
| strategy: | |
| matrix: | |
| test: | |
| - no-auth | |
| - basic-auth | |
| - oauth | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v4 | |
| - name: Install Blazectl | |
| run: .github/scripts/install-blazectl.sh | |
| - name: Download FhirDataEvaluator Image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: fhir-data-evaluator-image | |
| path: /tmp | |
| - name: Load FhirDataEvaluator Image | |
| run: docker load --input /tmp/fhir-data-evaluator.tar | |
| - name: Run Blaze and Proxy | |
| run: docker compose -f .github/integration-test/${{ matrix.test }}/docker-compose.yml up -d --wait --wait-timeout 300 --scale fhir-data-evaluator=0 | |
| - name: Wait for Blaze | |
| run: .github/scripts/wait-for-url.sh http://localhost:8082/health | |
| - name: Load Data | |
| run: .github/integration-test/${{ matrix.test }}/load-data.sh .github/integration-test/test-data | |
| - name: Run Integration Test for ICD10 | |
| run: .github/integration-test/evaluate-icd10.sh ${{ matrix.test }} | |
| - name: Run Integration Test for ICD10 to CSV | |
| run: .github/integration-test/evaluate-icd10-to-csv.sh ${{ matrix.test }} | |
| - name: Run Integration Test for ICD10 with Status to CSV | |
| run: .github/integration-test/evaluate-icd10WithStatus-to-csv.sh ${{ matrix.test }} | |
| - name: Run Integration Test for type code | |
| run: .github/integration-test/evaluate-code.sh ${{ matrix.test }} | |
| - name: Run Integration Test for type boolean | |
| run: .github/integration-test/evaluate-exists.sh ${{ matrix.test }} | |
| - name: Run Integration Test for Unique Count | |
| run: .github/integration-test/evaluate-unique-count.sh ${{ matrix.test }} | |
| - name: Run Integration Test for Unique Count with CSV | |
| run: .github/integration-test/evaluate-unique-count-to-csv.sh ${{ matrix.test }} | |
| - name: Run Integration Test for Unique Count with Components and with CSV | |
| run: .github/integration-test/evaluate-unique-count-with-components-to-csv.sh ${{ matrix.test }} | |
| - name: Run Integration Test to check if it correctly exits when there are insufficient writing permissions | |
| run: .github/integration-test/missing-permissions-test.sh | |
| - name: Run Integration Test for Posting the MeasureReport to the FHIR server | |
| run: .github/integration-test/evaluate-and-post-report.sh Test_PROJECT_Evaluation_1 | |
| if: matrix.test == 'no-auth' | |
| - name: Run Integration Test for Posting the MeasureReport to the FHIR server with the Same Project Identifier | |
| run: .github/integration-test/evaluate-and-post-update.sh Test_PROJECT_Evaluation_1 | |
| if: matrix.test == 'no-auth' | |
| - name: Run Integration Test for Posting the MeasureReport to the FHIR server with a Different Project Identifier | |
| run: .github/integration-test/evaluate-and-post-different-doc-ref.sh Test_PROJECT_Evaluation_2 | |
| if: matrix.test == 'no-auth' | |
| - name: Remove Blaze volumes | |
| run: docker compose -f .github/integration-test/${{ matrix.test }}/docker-compose.yml down -v | |
| - name: Run Blaze with fresh volumes | |
| run: docker compose -f .github/integration-test/${{ matrix.test }}/docker-compose.yml up -d | |
| - name: Wait for Blaze | |
| run: .github/scripts/wait-for-url.sh http://localhost:8082/health | |
| - name: Download New Data | |
| run: .github/integration-test/test-data/get-mii-testdata.sh | |
| - name: Upload New Data | |
| run: .github/integration-test/${{ matrix.test }}/load-data.sh .github/integration-test/Vorhofflimmern | |
| - name: Run Integration Test multiple stratifiers | |
| run: .github/integration-test/evaluate-multiple-stratifiers.sh ${{ matrix.test }} | |
| push-image: | |
| needs: | |
| - build | |
| - integration-test | |
| runs-on: ubuntu-22.04 | |
| if: ${{ ! startsWith(github.head_ref, 'dependabot/')}} | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v4 | |
| - name: Download Jar | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: fhir-data-evaluator-jar | |
| path: target | |
| - name: Download FhirDataEvaluator Image | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: fhir-data-evaluator-image | |
| path: /tmp | |
| - name: Load FhirDataEvaluator Image | |
| run: docker load --input /tmp/fhir-data-evaluator.tar | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to GitHub Container Registry | |
| uses: docker/login-action@v3 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Docker meta | |
| id: docker-meta | |
| uses: docker/metadata-action@v5 | |
| with: | |
| images: | | |
| ghcr.io/medizininformatik-initiative/fhir-data-evaluator | |
| tags: | | |
| type=ref,event=branch | |
| type=ref,event=pr | |
| type=semver,pattern={{version}} | |
| type=semver,pattern={{major}}.{{minor}} | |
| - name: Build and push | |
| uses: docker/build-push-action@v5 | |
| with: | |
| context: . | |
| file: docker/Dockerfile | |
| platforms: linux/amd64,linux/arm64 | |
| push: true | |
| tags: ${{ steps.docker-meta.outputs.tags }} | |
| labels: ${{ steps.docker-meta.outputs.labels }} |