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update workshop schedule
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ivagljiva committed Feb 17, 2025
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Expand Up @@ -45,7 +45,8 @@ Here is a very preliminary overview of the workshop content:

#### Monday 3: Genomics

9:00 - 10:15 | Introduction to **anvi'o software ecosystem**
9:00 - 9:15 | Introduction to the **workshop faculty & setting**
9:15 - 10:15 | Introduction to the **anvi'o software ecosystem**
10:15 - 10:30 | Coffee & Tea Break
10:30 - 12:00 | **Genomics** (gene calling, functional annotation, taxonomic characterization)
12:00 - 13:00 | Group lunch at Bar Celona
Expand All @@ -56,25 +57,25 @@ Here is a very preliminary overview of the workshop content:

#### Tuesday 4: Metabolic reconstruction; Pangenomics

9:00 - 10:15 | **Functions and metabolism** (functional annotation, estimation of metabolic potential in genomes and metagenomes)
9:00 - 10:15 | **Functions and metabolism** (estimation of metabolic potential in genomes and metagenomes)
10:15 - 10:30 | Coffee & Tea Break
10:30 - 12:00 | **Functions and metabolism**, continued
12:00 - 13:00 | Group lunch at Bar Celona
13:00 - 14:00 | Symposium talks
14:00 - 15:30 | **Pangenomics** (introduction to pangenomics, and its computational and biological underpinnings)
14:00 - 15:30 | **Phylogenomics** (theoretical introduction and hands-on session)
15:30 - 15:45 | Coffee & Tea Break
15:45 - 17:30 | **Pangenomics**, continued
15:45 - 17:30 | **Phylogenomics**, continued

#### Wednesday 5: Pangenomics; Phylogenomics

9:00 - 10:15 | **Pangenomics** (hands-on session)
9:00 - 10:15 | **Pangenomics** (introduction to pangenomics, and its computational and biological underpinnings)
10:15 - 10:30 | Coffee & Tea Break
10:30 - 12:00 | **Pangenomics**, continued
10:30 - 12:00 | **Pangenomics** (hands-on session)
12:00 - 13:00 | Group lunch at Bar Celona
13:00 - 14:00 | Symposium talks
14:00 - 15:30 | **Phylogenomics** (theoretical introduction and hands-on session)
14:00 - 15:30 | **Pangenomics** (hands-on session), continued
15:30 - 15:45 | Coffee & Tea Break
15:45 - 17:30 | **Phylogenomics**, continued
15:45 - 17:30 | **Pangenome graphs** (theory + hands-on)

#### Thursday 6: Metagenomics; Genome-resolved metagenomics

Expand All @@ -94,7 +95,7 @@ Here is a very preliminary overview of the workshop content:
10:30 - 12:00 | **Microbial population genetics**, continued
12:00 - 13:00 | Group lunch at Bar Celona
13:00 - 14:00 | Symposium talks
14:00 - 15:30 | How to build **automated, scalable, and reproducible bioinformatics workflows**
14:00 - 15:30 | How to use **automated, scalable, and reproducible bioinformatics workflows**
15:30 - 15:45 | Coffee & Tea Break
15:45 - 17:30 | **Bioninformatics workflows**, continued

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