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mesoscope · Nov 6, 2023 · b7ee02e · b7ee02e
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diff --git a/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html b/_modules/cellpack/autopack/loaders/migrate_v1_to_v2.html
@@ -144,6 +144,8 @@ <h1>Source code for cellpack.autopack.loaders.migrate_v1_to_v2</h1><div class="h
     <span class="n">new_ingredient</span><span class="p">[</span><span class="s2">&quot;representations&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">get_representations</span><span class="p">(</span><span class="n">old_ingredient</span><span class="p">)</span>
     <span class="k">if</span> <span class="n">new_ingredient</span><span class="p">[</span><span class="s2">&quot;type&quot;</span><span class="p">]</span> <span class="o">==</span> <span class="n">INGREDIENT_TYPE</span><span class="o">.</span><span class="n">SINGLE_SPHERE</span><span class="p">:</span>
         <span class="n">new_ingredient</span><span class="p">[</span><span class="s2">&quot;radius&quot;</span><span class="p">]</span> <span class="o">=</span> <span class="n">old_ingredient</span><span class="p">[</span><span class="s2">&quot;radii&quot;</span><span class="p">][</span><span class="mi">0</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+    <span class="k">if</span> <span class="s2">&quot;partners&quot;</span> <span class="ow">in</span> <span class="n">new_ingredient</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">new_ingredient</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;names&quot;</span><span class="p">):</span>
+        <span class="k">del</span> <span class="n">new_ingredient</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]</span>
     <span class="k">return</span> <span class="n">new_ingredient</span></div>
 
 

diff --git a/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html b/_modules/cellpack/autopack/loaders/migrate_v2_to_v2_1.html
@@ -47,7 +47,7 @@ <h1>Source code for cellpack.autopack.loaders.migrate_v2_to_v2_1</h1><div class=
 <a class="viewcode-back" href="../../../../cellpack.autopack.loaders.html#cellpack.autopack.loaders.migrate_v2_to_v2_1.convert_partners">[docs]</a>
 <span class="k">def</span> <span class="nf">convert_partners</span><span class="p">(</span><span class="n">object_data</span><span class="p">):</span>
     <span class="n">partners_list</span> <span class="o">=</span> <span class="p">[]</span>
-    <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="s2">&quot;partners&quot;</span><span class="p">:</span>
+    <span class="k">if</span> <span class="s2">&quot;names&quot;</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]:</span>
         <span class="k">return</span> <span class="n">partners_list</span>
     <span class="k">for</span> <span class="n">index</span><span class="p">,</span> <span class="n">name</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">][</span><span class="s2">&quot;names&quot;</span><span class="p">]):</span>
         <span class="n">positions</span> <span class="o">=</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">][</span><span class="s2">&quot;positions&quot;</span><span class="p">]</span>
@@ -58,7 +58,10 @@ <h1>Source code for cellpack.autopack.loaders.migrate_v2_to_v2_1</h1><div class=
         <span class="n">binding_probability</span> <span class="o">=</span> <span class="mf">1.0</span>
         <span class="k">if</span> <span class="s2">&quot;probability_binding&quot;</span> <span class="ow">in</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]:</span>
             <span class="n">binding_probability</span> <span class="o">=</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">][</span><span class="s2">&quot;probability_binding&quot;</span><span class="p">]</span>
-        <span class="k">if</span> <span class="s2">&quot;probability_repelled&quot;</span> <span class="ow">in</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]:</span>
+        <span class="k">if</span> <span class="p">(</span>
+            <span class="s2">&quot;probability_repelled&quot;</span> <span class="ow">in</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">]</span>
+            <span class="ow">and</span> <span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">][</span><span class="s2">&quot;probability_repelled&quot;</span><span class="p">]</span> <span class="o">&lt;</span> <span class="mi">0</span>
+        <span class="p">):</span>
             <span class="n">binding_probability</span> <span class="o">=</span> <span class="o">-</span><span class="n">object_data</span><span class="p">[</span><span class="s2">&quot;partners&quot;</span><span class="p">][</span><span class="s2">&quot;probability_repelled&quot;</span><span class="p">]</span>
 
         <span class="n">partner</span> <span class="o">=</span> <span class="p">{</span>