Deploying to gh-pages from main @ bde01cb 🚀

mesoscope · Mar 19, 2024 · d2763a6 · d2763a6
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diff --git a/.buildinfo b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: d2a16ea7036d261d6aa567fdc606a19c
+config: 27697d2a69709ee8f0e3bde3ff337fed
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/RECIPE_SCHEMA.html b/RECIPE_SCHEMA.html
@@ -5,11 +5,11 @@
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="viewport" content="width=device-width, initial-scale=1" />
 
-    <title>Cellpack Recipe Schema 1.0 &#8212; cellPack 1.0.5 documentation</title>
+    <title>Cellpack Recipe Schema 1.0 &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/classic.css?v=514cf933" />
 
-    <script src="_static/documentation_options.js?v=d55fa986"></script>
+    <script src="_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -25,7 +25,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">cellPack 1.0.7 documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">Cellpack Recipe Schema 1.0</a></li> 
       </ul>
     </div>  
@@ -604,7 +604,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="index.html">cellPack 1.0.7 documentation</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">Cellpack Recipe Schema 1.0</a></li> 
       </ul>
     </div>

diff --git a/_modules/cellpack.html b/_modules/cellpack.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/classic.css?v=514cf933" />
 
-    <script src="../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="index.html" accesskey="U">Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">cellpack</a></li> 
       </ul>
@@ -44,7 +44,7 @@ <h1>Source code for cellpack</h1><div class="highlight"><pre>
 <span class="n">__email__</span> <span class="o">=</span> <span class="s2">&quot;[email protected]&quot;</span>
 <span class="c1"># Do not edit this string manually, always use bumpversion</span>
 <span class="c1"># Details in CONTRIBUTING.md</span>
-<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.0.5&quot;</span>
+<span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.0.7&quot;</span>
 
 <span class="kn">from</span> <span class="nn">.autopack.loaders.recipe_loader</span> <span class="kn">import</span> <span class="n">RecipeLoader</span>  <span class="c1"># noqa: F401</span>
 
@@ -85,7 +85,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="index.html" >Module code</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">cellpack</a></li> 
       </ul>

diff --git a/_modules/cellpack/autopack.html b/_modules/cellpack/autopack.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/classic.css?v=514cf933" />
 
-    <script src="../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../cellpack.html" accesskey="U">cellpack</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">cellpack.autopack</a></li> 
@@ -709,7 +709,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../cellpack.html" >cellpack</a> &#187;</li>
         <li class="nav-item nav-item-this"><a href="">cellpack.autopack</a></li> 

diff --git a/_modules/cellpack/autopack/AWSHandler.html b/_modules/cellpack/autopack/AWSHandler.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack.AWSHandler &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack.AWSHandler &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/classic.css?v=514cf933" />
 
-    <script src="../../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" accesskey="U">cellpack.autopack</a> &#187;</li>
@@ -182,7 +182,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" >cellpack.autopack</a> &#187;</li>

diff --git a/_modules/cellpack/autopack/Analysis.html b/_modules/cellpack/autopack/Analysis.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack.Analysis &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack.Analysis &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/classic.css?v=514cf933" />
 
-    <script src="../../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" accesskey="U">cellpack.autopack</a> &#187;</li>
@@ -2880,7 +2880,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" >cellpack.autopack</a> &#187;</li>

diff --git a/_modules/cellpack/autopack/BaseGrid.html b/_modules/cellpack/autopack/BaseGrid.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack.BaseGrid &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack.BaseGrid &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/classic.css?v=514cf933" />
 
-    <script src="../../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" accesskey="U">cellpack.autopack</a> &#187;</li>
@@ -1026,7 +1026,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" >cellpack.autopack</a> &#187;</li>

diff --git a/_modules/cellpack/autopack/Compartment.html b/_modules/cellpack/autopack/Compartment.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack.Compartment &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack.Compartment &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/classic.css?v=514cf933" />
 
-    <script src="../../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" accesskey="U">cellpack.autopack</a> &#187;</li>
@@ -1379,7 +1379,7 @@ <h1>Source code for cellpack.autopack.Compartment</h1><div class="highlight"><pr
 
         <span class="n">off_grid_surface_points</span> <span class="o">=</span> <span class="n">surface_points_in_bounding_box</span>
 
-        <span class="n">ex</span> <span class="o">=</span> <span class="kc">False</span>  <span class="c1"># True if nbGridPoints == len(idarray) else False</span>
+        <span class="n">ex</span> <span class="o">=</span> <span class="kc">True</span>  <span class="c1"># True if nbGridPoints == len(idarray) else False</span>
 
         <span class="n">surfacePoints</span><span class="p">,</span> <span class="n">surfacePointsNormals</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">extendGridArrays</span><span class="p">(</span>
             <span class="n">nbGridPoints</span><span class="p">,</span>
@@ -3368,7 +3368,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" >cellpack.autopack</a> &#187;</li>

diff --git a/_modules/cellpack/autopack/DBRecipeHandler.html b/_modules/cellpack/autopack/DBRecipeHandler.html
@@ -4,11 +4,11 @@
   <head>
     <meta charset="utf-8" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-    <title>cellpack.autopack.DBRecipeHandler &#8212; cellPack 1.0.5 documentation</title>
+    <title>cellpack.autopack.DBRecipeHandler &#8212; cellPack 1.0.7 documentation</title>
     <link rel="stylesheet" type="text/css" href="../../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../../_static/classic.css?v=514cf933" />
 
-    <script src="../../../_static/documentation_options.js?v=d55fa986"></script>
+    <script src="../../../_static/documentation_options.js?v=46dfa7f5"></script>
     <script src="../../../_static/doctools.js?v=888ff710"></script>
     <script src="../../../_static/sphinx_highlight.js?v=dc90522c"></script>
 
@@ -24,7 +24,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" accesskey="U">cellpack.autopack</a> &#187;</li>
@@ -901,7 +901,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="../../../py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.5 documentation</a> &#187;</li>
+        <li class="nav-item nav-item-0"><a href="../../../index.html">cellPack 1.0.7 documentation</a> &#187;</li>
           <li class="nav-item nav-item-1"><a href="../../index.html" >Module code</a> &#187;</li>
           <li class="nav-item nav-item-2"><a href="../../cellpack.html" >cellpack</a> &#187;</li>
           <li class="nav-item nav-item-3"><a href="../autopack.html" >cellpack.autopack</a> &#187;</li>