add docker file for testing

Dockerfile

@@ -0,0 +1,33 @@
+# Start with the Miniconda base image
+FROM continuumio/miniconda3:24.9.2-0
+
+# Set the working directory in the container
+WORKDIR /main
+
+# Copy the environment file and project code
+COPY atlasenv.yml .
+
+# Create a user with a specific UID and GID
+RUN groupadd -g 1000 atlasgroup && \
+    useradd -m -u 1000 -g atlasgroup -s /bin/bash atlasuser
+
+# Set the HOME environment variable
+ENV HOME=/home/atlasuser
+
+# Change ownership of the home directory
+RUN chown -R atlasuser:atlasgroup $HOME
+
+# Switch to the new user
+USER atlasuser
+
+# Create and activate the environment
+RUN conda env create -n atlas -f atlasenv.yml && \
+    conda clean -afy && \
+    echo "source activate atlas" > ~/.bashrc
+
+# Set the working directory
+WORKDIR /main
+
+
+# Set the default command
+CMD ["bash"]

docker_run.sh

@@ -0,0 +1 @@
+docker run -it --name atlas-debug -v $(pwd):/main  atlas-debug