Merge pull request #9 from metaspace2020/dev

GH actions to release to pypi

.github/workflows/release.yml

@@ -0,0 +1,38 @@
+name: Release Python Package to PyPI
+
+on:
+  release:
+    types:
+      - created
+
+jobs:
+  build_and_deploy:
+    name: Publish package distributions to PyPI
+    runs-on: ubuntu-latest
+
+    environment:
+      name: pypi
+      url: https://pypi.org/p/metaspace2020
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v4
+
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: 3.9
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+
+    - name: Build package
+      run: python -m build
+
+    - name: Publish package to PyPI
+      uses: pypa/[email protected]
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}

README.md

@@ -21,7 +21,7 @@ If you encounter any bugs or have suggestions for new features, please open an i
 
 ## Installation
 
-Our package requires `python >= 3.8`.
+Our package requires `python >= 3.9`.
 
 ```bash
 pip install -U git+https://github.com/metaspace2020/metaspace-converter@master

metaspace_converter/tests/to_spatialdata_test.py

@@ -112,7 +112,7 @@ def test_metaspace_with_napari_spatialdata(dataset_id, database, fdr, sm, reques
     ][0]
     # 1. Select coordinate system
     sdata_widget.coordinate_system_widget._select_coord_sys(COORD_SYS_GLOBAL)
-    sdata_widget.elements_widget._onClickChange(COORD_SYS_GLOBAL)
+    sdata_widget.elements_widget._onItemChange(COORD_SYS_GLOBAL)
     # 2. Select image element
     sdata_widget._onClick(OPTICAL_IMAGE_KEY)
     # 3. Select points element

pyproject.toml

@@ -10,10 +10,10 @@ authors = [
     {name = "Andreas Eisenbarth", email = "[email protected]"},
 ]
 description = "Convert Metaspace datasets to AnnData"
-requires-python = ">=3.8"
-license = {text = "GPLv3"}
+requires-python = ">=3.9"
+license = {text = "Apache-2.0"}
 classifiers = [
-    "License :: OSI Approved :: GNU General Public License v3",
+    "License :: OSI Approved :: Apache Software License",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Intended Audience :: Science/Research",
     "Natural Language :: English",