Incorporate Bioconductor recommendations #326
Annotations
5 errors and 11 warnings
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Run neurogenomics/rworkflows@master
No such keg: /opt/homebrew/Cellar/[email protected]
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Run neurogenomics/rworkflows@master
R CMD check found ERRORs
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Run neurogenomics/rworkflows@master
rownames of 'x' mismatch with node labels of the tree
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Run neurogenomics/rworkflows@master
Test failures
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Run neurogenomics/rworkflows@master
Process completed with exit code 1.
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Run neurogenomics/rworkflows@master
pkgconf 2.3.0_1 is already installed and up-to-date.
To reinstall 2.3.0_1, run:
brew reinstall pkgconf
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Run neurogenomics/rworkflows@master
HOMEBREW_NO_INSTALLED_DEPENDENTS_CHECK is set: not checking for outdated
dependents or dependents with broken linkage!
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Run neurogenomics/rworkflows@master
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run neurogenomics/rworkflows@master
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run neurogenomics/rworkflows@master
harfbuzz 10.1.0 is already installed and up-to-date.
To reinstall 10.1.0, run:
brew reinstall harfbuzz
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Run neurogenomics/rworkflows@master
fribidi 1.0.16 is already installed and up-to-date.
To reinstall 1.0.16, run:
brew reinstall fribidi
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Run neurogenomics/rworkflows@master
macOS's Gatekeeper has been disabled for this Cask
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Run neurogenomics/rworkflows@master
dependency ‘BiocVersion’ is not available
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Run neurogenomics/rworkflows@master
unable to access index for repository https://cran.rstudio.com/bin/macosx/big-sur-arm64/contrib/4.5:
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Run neurogenomics/rworkflows@master
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.5:
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The following artifacts were uploaded using a version of actions/upload-artifact that is scheduled for deprecation: "Linux-biocversion-devel-r-auto-results", "macOS-biocversion-devel-r-auto-results", "Windows-biocversion-devel-r-auto-results".
Please update your workflow to use v4 of the artifact actions.
Learn more: https://github.blog/changelog/2024-04-16-deprecation-notice-v3-of-the-artifact-actions/
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