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TuomasBorman committed Oct 5, 2023
1 parent bf35131 commit d40893b
Showing 1 changed file with 9 additions and 9 deletions.
18 changes: 9 additions & 9 deletions vignettes/miaViz.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -256,6 +256,15 @@ plotColGraph(altExp(GlobalPatterns,"Genus"),

# Plotting of serial data

```{r, eval=FALSE}
if(!requireNamespace("devtools", quietly = TRUE)){
BiocManager::install("devtools")
}
if(!requireNamespace("miaTime", quietly = TRUE)){
devtools::install_github("microbiome/miaTime", upgrade = "never")
}
```

```{r, eval=FALSE}
# Load data from miaTime package
library("miaTime")
Expand Down Expand Up @@ -329,15 +338,6 @@ plotDMNFit(dmn_se, type = "laplace")

# Serial data ordination and trajectories

```{r, eval=FALSE}
if(!requireNamespace("devtools", quietly = TRUE)){
BiocManager::install("devtools")
}
if(!requireNamespace("miaTime", quietly = TRUE)){
devtools::install_github("microbiome/miaTime", upgrade = "never")
}
```

Principal Coordinates Analysis using Bray-Curtis dissimilarity on the
`hitchip1006` dataset:

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