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@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

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  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 30 8

  2. NMDC_documentation NMDC_documentation Public

    Document workflows, schemas, and portal

    2 3

Repositories

Showing 10 of 81 repositories
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 0 0 4 1 Updated Mar 6, 2025
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    HTML 7 5 109 (2 issues need help) 16 Updated Mar 6, 2025
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 30 CC0-1.0 8 356 (1 issue needs help) 13 Updated Mar 6, 2025
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 9 0 148 16 Updated Mar 6, 2025
  • ontology-loader Public
    microbiomedata/ontology-loader’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2025
  • nmdc_notebooks Public

    Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

    microbiomedata/nmdc_notebooks’s past year of commit activity
    Jupyter Notebook 5 CC0-1.0 0 6 3 Updated Mar 5, 2025
  • nmdc_automation Public

    Prototype automation

    microbiomedata/nmdc_automation’s past year of commit activity
    Python 2 2 61 4 Updated Mar 5, 2025
  • metaAssembly Public

    Workflow for metagenome assembly

    microbiomedata/metaAssembly’s past year of commit activity
    WDL 4 4 1 0 Updated Mar 5, 2025
  • ReadsQC Public
    microbiomedata/ReadsQC’s past year of commit activity
    WDL 3 6 2 1 Updated Mar 5, 2025
  • nmdc_api_utilities Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_api_utilities’s past year of commit activity
    Python 2 0 1 0 Updated Mar 5, 2025
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